Results 101 to 110 of about 1,566,477 (261)

High Resolution Mapping of QTLs for Heat Tolerance in Rice Using a 5K SNP Array

Rice, 2017
BackgroundHeat stress is one of the major abiotic threats to rice production, next to drought and salinity stress. Incidence of heat stress at reproductive phase of the crop results in abnormal pollination leading to floret sterility, low seed set and ...
Shanmugavadivel Ps, A. Sv, C. Prakash, Ramkumar Mk, R. Tiwari, T. Mohapatra, N. Singh   +6 more
semanticscholar   +1 more source

A saturated genetic linkage map of autotetraploid alfalfa (Medicago sativa L.) developed using genotyping-by-sequencing is highly syntenous with the Medicago truncatula genome. [PDF]

, 2014
A genetic linkage map is a valuable tool for quantitative trait locus mapping, map-based gene cloning, comparative mapping, and whole-genome assembly. Alfalfa, one of the most important forage crops in the world, is autotetraploid, allogamous, and highly
Acharya, Ananta, Brummer, E Charles, Jiang, Qingzhen, Kang, Junmei, Li, Xuehui, Wei, Yanling   +5 more
core   +2 more sources

Construction of Agropyron Gaertn. genetic linkage maps using a wheat 660K SNP array reveals a homoeologous relationship with the wheat genome

Plant Biotechnology Journal, 2017
Summary Agropyron Gaertn. (P genome) is a wild relative of wheat that harbours many genetic variations that could be used to increase the genetic diversity of wheat.
Shenghui Zhou, Jinpeng Zhang, Y. Che, Weihua Liu, Yuqing Lu, Xin-ming Yang, Xiuquan Li, J. Jia, Xu Liu, Lihui Li   +9 more
semanticscholar   +1 more source

A 3K Axiom SNP array from a transcriptome-wide SNP resource sheds new light on the genetic diversity and structure of the iconic subtropical conifer tree Araucaria angustifolia (Bert.) Kuntze.

PLoS ONE, 2020
High-throughput SNP genotyping has become a precondition to move to higher precision and wider genome coverage genetic analysis of natural and breeding populations of non-model species.
Pedro Italo T Silva, Orzenil B Silva-Junior, Lucileide V Resende, Valderes A Sousa, Ananda V Aguiar, Dario Grattapaglia   +5 more
doaj   +1 more source

Developing a 670k genotyping array to tag ~2M SNPs across 24 horse breeds

BMC Genomics, 2017
Background To date, genome-scale analyses in the domestic horse have been limited by suboptimal single nucleotide polymorphism (SNP) density and uneven genomic coverage of the current SNP genotyping arrays.
Robert J. Schaefer, Mikkel Schubert, Ernest Bailey, Danika L. Bannasch, Eric Barrey, Gila Kahila Bar-Gal, Gottfried Brem, Samantha A. Brooks, Ottmar Distl, Ruedi Fries, Carrie J. Finno, Vinzenz Gerber, Bianca Haase, Vidhya Jagannathan, Ted Kalbfleisch, Tosso Leeb, Gabriella Lindgren, Maria Susana Lopes, Núria Mach, Artur da Câmara Machado, James N. MacLeod, Annette McCoy, Julia Metzger, Cecilia Penedo, Sagi Polani, Stefan Rieder, Imke Tammen, Jens Tetens, Georg Thaller, Andrea Verini-Supplizi, Claire M. Wade, Barbara Wallner, Ludovic Orlando, James R. Mickelson, Molly E. McCue   +34 more
doaj   +1 more source

Prenatal diagnosis and genetic etiology analysis of talipes equinovarus by chromosomal microarray analysis

BMC Medical Genomics, 2023
Background With the advancement of molecular technology, fetal talipes equinovarus (TE) is believed to be not only associated with chromosome aneuploidy, but also related to chromosomal microdeletion and microduplication.
Xiaorui Xie, Baojia Huang, Linjuan Su, Meiying Cai, Yuqin Chen, Xiaoqing Wu, Liangpu Xu   +6 more
doaj   +1 more source

SNPrune: an efficient algorithm to prune large SNP array and sequence datasets based on high linkage disequilibrium

Genetics Selection Evolution, 2018
High levels of pairwise linkage disequilibrium (LD) in single nucleotide polymorphism (SNP) array or whole-genome sequence data may affect both performance and efficiency of genomic prediction models.
M. Calus, J. Vandenplas
semanticscholar   +1 more source

Genomic regions, cellular components and gene regulatory basis underlying pod length variations in cowpea (V. unguiculata L. Walp). [PDF]

, 2016
Cowpea (V. unguiculata L. Walp) is a climate resilient legume crop important for food security. Cultivated cowpea (V. unguiculata L) generally comprises the bushy, short-podded grain cowpea dominant in Africa and the climbing, long-podded ...
Close, Timothy J, Hu, Yaowen, Huynh, Bao-Lam, Li, Guojing, Lu, Zhongfu, Muñoz-Amatriaín, María, Roberts, Philip A, Wang, Baogen, Wu, Xiaohua, Wu, Xinyi, Xu, Pei, Zhou, Wen   +11 more
core   +1 more source

CropSNPdb: a database of SNP array data for Brassica crops and hexaploid bread wheat

The Plant Journal, 2019
Advances in sequencing technology have led to a rapid rise in the genomic data available for plants, driving new insights into the evolution, domestication and improvement of crops.
Armin Scheben, Brent Verpaalen, C. Lawley, C. K. Chan, P. Bayer, J. Batley, D. Edwards   +6 more
semanticscholar   +1 more source

A High-density linkage map for Eucalyptus urophylla and E. grandis based on 1,100 F1 progenies genotyped with 6,000 SnP markers : P0474 [PDF]

, 2013
Next generation sequencing (NGS) technologies and high-throughput genotyping methods offer the possibility to produce dense linkage maps with highly reliable markers which can be anchored on the physical map of the genome.
Bartholomé, Jérôme, Gion, Jean-Marc, Klopp, Christophe, Mandrou, Eric, Nabihoudine, Ibouniyamine, Plomion, Christophe   +5 more
core