mendelFix: a Perl script for checking Mendelian errors in high density SNP data of trio designs [PDF]
arXiv, 2013 Here we present mendelFix, a Perl script for checking Mendelian errors in genome-wide SNP data of trio designs. The program takes 12-recoded PLINK PED and MAP files as input to calculate a series of summary statistics for Mendelian errors, sets missing offspring genotypes that present Mendelian inconsistencies, and implements a simplistic procedure to ...
arxiv
Melting Curve Analysis of SNPs (McSNP ® ): A Gel-Free and Inexpensive Approach for SNP Genotyping [PDF]
, 2001 Joshua M. Akey +8 more
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A real-time PCR genotyping assay to detect FAD2A SNPs in peanuts (Arachis hypogaea L.) [PDF]
, 2001 Noelle A. Barkley +2 more
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Genotyping-By-Sequencing for Plant Genetic Diversity Analysis: A Lab Guide for SNP Genotyping
, 2014 Genotyping-by-sequencing (GBS) has recently emerged as a promising genomic approach for exploring plant genetic diversity on a genome-wide scale. However, many uncertainties and challenges remain in the application of GBS, particularly in non-model ...
G. W. Peterson +3 more
semanticscholar +1 more source
A model selection approach to genome wide association studies [PDF]
arXiv, 2010 For the vast majority of genome wide association studies (GWAS) published so far, statistical analysis was performed by testing markers individually. In this article we present some elementary statistical considerations which clearly show that in case of complex traits the approach based on multiple regression or generalized linear models is preferable
arxiv
Genotyping and drug response: Use of single nucleotide polymorphisms (SNPs) versus haplotypes to predict albuterol efficacy [PDF]
, 2001 Suzanne Schubbert
openalex +1 more source
Learning the optimal scale for GWAS through hierarchical SNP aggregation [PDF]
arXiv, 2017 Motivation: Genome-Wide Association Studies (GWAS) seek to identify causal genomic variants associated with rare human diseases. The classical statistical approach for detecting these variants is based on univariate hypothesis testing, with healthy individuals being tested against affected individuals at each locus.
arxiv
Multiplex SNP Genotyping Using Locked Nucleic Acid and Microfluidics [PDF]
, 2001 Yoanna Choleva +8 more
openalex +1 more source
Ordered catenation of sequence-tagged sites and multiplexed SNP genotyping by sequencing [PDF]
, 2002 Koichiro Higasa
openalex +1 more source
SNP Genotyping Using Single-Tube Fluorescent Bidirectional PCR [PDF]
, 2002 Christy Waterfall, Benjamin D. Cobb
openalex +1 more source