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???????????????????????? SNP-?????????????? ?????? ???????????????????????????? ???????????????????? ?????????????????? ???????????????????????? ?????????????????? ?????????????????? ?? ?????????? [PDF]
, 2021 Aims. The determination of the contribution of precursor populations into the genetic structure of modern inbreds accoding to the results of DNA single nucleotide polymorphism analysis. Methods. SNP-genotyping of 5 maize inbreds with GoldenGate test, Illumina VeraCode, Sentrix array matrice, BDI-III-pannel of 384 SNP-markers, computer analysis by ...
Zhu (11255682)
core +6 more sources
Multiple Testing for SNP-SNP Interactions [PDF]
Statistical Applications in Genetics and Molecular Biology, 2007 Most genetic diseases are complex, i.e. associated to combinations of SNPs rather than individual SNPs. In the last few years, this topic has often been addressed in terms of SNP-SNP interaction patterns given as expressions linked by logical operators.
Anne-Laure, Boulesteix +4 more
openaire +2 more sources
SNP-Flankplus: SNP ID-centric retrieval for SNP flanking sequences [PDF]
Bioinformation, 2008 The flanking sequences provided by dbSNP of NCBI are usually short and fixed length without further extension, thus making the design of appropriate PCR primers difficult. Here, we introduce a tool named "SNP-Flankplus" to provide a web environment for retrieval of SNP flanking sequences from both the dbSNP and the nucleotide databases of NCBI. Two SNP
Cheng-Hong, Yang +3 more
openaire +2 more sources
, 2018 VCF files containing SNPs for ground-dove Columbicola and Physconelloides. Includes SNPs for Columbicola passerinae, C. passerinae 1, C. passerinae 2, Physconelloides eurysema, and P.
Kevin Johnson (684369) +1 more
core +3 more sources
SNPsyn: detection and exploration of SNP–SNP interactions [PDF]
Nucleic Acids Research, 2011 SNPsyn (http://snpsyn.biolab.si) is an interactive software tool for the discovery of synergistic pairs of single nucleotide polymorphisms (SNPs) from large genome-wide case-control association studies (GWAS) data on complex diseases. Synergy among SNPs is estimated using an information-theoretic approach called interaction analysis.
Tomaz Curk, Gregor Rot, Blaz Zupan
openaire +3 more sources
SNP-VISTA: An interactive SNP visualization tool [PDF]
BMC Bioinformatics, 2005 Abstract Background Recent advances in sequencing technologies promise to provide a better understanding of the genetics of human disease as well as the evolution of microbial populations. Single Nucleotide Polymorphisms (SNPs) are established genetic markers that aid in the identification of loci affecting quantitative ...
Nameeta Y. Shah +6 more
openaire +6 more sources
SNP by SNP by environment interaction network of alcoholism [PDF]
BMC Systems Biology, 2017 Alcoholism has a strong genetic component. Twin studies have demonstrated the heritability of a large proportion of phenotypic variance of alcoholism ranging from 50-80%. The search for genetic variants associated with this complex behavior has epitomized sequence-based studies for nearly a decade. The limited success of genome-wide association studies
Amin Zollanvari, Gil Alterovitz
openaire +4 more sources
SNP+ to predict dropout rates in SNP arrays
Conservation Genetics Resources, 2022 Abstract Genotyping individuals using forensic or non-invasive samples such as hair or fecal samples increases the risk of allelic amplification failure (dropout) due to the low quality and quantity of DNA. One way to decrease genotyping errors is to increase the number of replicates per sample.
Sastre Alaiz, Natalia +2 more
openaire +3 more sources
NABIC SNP: an integrated database for SNP markers [PDF]
Bioinformation, 2015 The National Agricultural Biotechnology Information Center (NABIC) constructed a web-based database to provide information about 54,310 single nucleotide polymorphisms (SNPs) identified in the seven species in a high-throughput manner. The database consists of three major functional categories: SNP marker search, detailed information viewer and ...
Kim, Chang-Kug +3 more
openaire +2 more sources
SNP locator: a candidate SNP selection tool [PDF]
International Journal of Data Mining, Modelling and Management, 2013 [Abstract] In this work, a data integration approach using a federated model based on a service oriented architecture (SOA) is presented. The BioMOBY middleware was used to implement each service which is part of the integration process. As an example of usage of this architecture, a web tool for candidate SNP selection has been developed.
José A. Seoane +5 more
openaire +2 more sources