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Spatial Transcriptomics Arena (STAr): an Integrated Platform for Spatial Transcriptomics Methodology Research

2023
Abstract The emerging field of spatially resolved transcriptomics (SRT) has revolutionized biomedical research. SRT quantifies expression levels at different spatial locations, providing a new and powerful tool to interrogate novel biological insights.
Xi, Jiang   +12 more
openaire   +2 more sources

Spatial transcriptomics in health and disease

Nature Reviews Nephrology
The ability to localize hundreds of macromolecules to discrete locations, structures and cell types in a tissue is a powerful approach to understand the cellular and spatial organization of an organ. Spatially resolved transcriptomic technologies enable mapping of transcripts at single-cell or near single-cell resolution in a multiplex manner.
Sanjay Jain, Michael T. Eadon
openaire   +2 more sources

Spatial Transcriptomic Analyses of Spermatogenesis

Measuring mRNA abundance at the level of the whole transcriptome has become an indispensable tool for the investigation of fundamental biological processes in higher eukaryotes. However, traditional transcriptomic methods are destructive and ignore the three-dimensional organization of cells within tissues and organs.
Ndifereke, Uboh   +3 more
openaire   +2 more sources

Spatial transcriptomic applications in orthopedics

Connective Tissue Research
This review highlights the transformative impact of spatial transcriptomics on orthopedic research, focusing on its application in deciphering intricate gene expression patterns within musculoskeletal tissues.The paper reviews literature for spatial transcriptomic methods, specifically 10X Visium, 10X Xenium, seqFISH+, MERFISH, NanoString GeoMx DSP ...
Thomas L. Jenkins   +2 more
openaire   +2 more sources

Spatial transcriptomics in glomerular diseases

Rheumatology
Abstract Spatial transcriptomics enables the study of the mechanisms of disease through gene expression and pathway activity analysis in a spatial context. Originally mainly employed in oncology, the techniques developed use different methods of transcript identification, resolution (single cells vs regions), flexibility of target ...
Renate Kain, André Oszwald
openaire   +2 more sources

A practical guide to spatial transcriptomics

Molecular Aspects of Medicine
Spatial transcriptomics is revolutionizing modern biology, offering researchers an unprecedented ability to unravel intricate gene expression patterns within tissues. From pioneering techniques to newly commercialized platforms, the field of spatial transcriptomics has evolved rapidly, ushering in a new era of understanding across various disciplines ...
Lukas Valihrach   +3 more
openaire   +3 more sources

Designing spatial transcriptomic experiments

Nature Methods, 2023
Dario Righelli   +2 more
openaire   +2 more sources

Spatial transcriptomics

2023
Dheeraj Chandra Joshi   +2 more
openaire   +1 more source

Exploring tissue architecture using spatial transcriptomics

Nature, 2021
Anjali Rao, Dalia Barkley, Itai Yanai
exaly  

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