Results 31 to 40 of about 2,990,182 (255)

RNA splicing: a split consensus reveals two major 5′ splice site classes

open access: yesOpen Biology
The established consensus sequence for human 5′ splice sites masks the presence of two major splice site classes defined by preferential base-pairing potentials with either U5 snRNA loop 1 or the U6 snRNA ACAGA box.
Matthew T. Parker   +2 more
doaj   +1 more source

ST5 - Revised Splice of ODP Site 162-982

open access: yes, 2017
ST5 - Revised Splice of ODP Site 162 ...
Drury, Anna Joy   +7 more
core   +1 more source

In silico prioritization and further functional characterization of SPINK1 intronic variants

open access: yesHuman Genomics, 2017
Background SPINK1 (serine protease inhibitor, kazal-type, 1), which encodes human pancreatic secretory trypsin inhibitor, is one of the most extensively studied genes underlying chronic pancreatitis.
Wen-Bin Zou   +7 more
doaj   +1 more source

New methods for splice site recognition

open access: yes, 2022
S.329-336Splice sites are locations in DNA which separate protein-coding regions (exons) from noncoding regions (introns). Accurate splice site detectors thus form important components of computational gene finders.
Sonnenburg, S.   +3 more
core   +1 more source

Comparison of In Silico Tools for Splice-Altering Variant Prediction Using Established Spliceogenic Variants: An End-User’s Point of View

open access: yesInternational Journal of Genomics, 2022
Assessing the impact of variants of unknown significance on splicing has become a critical issue and a bottleneck, especially with the widespread implementation of whole-genome or exome sequencing.
Woori Jang   +3 more
doaj   +1 more source

Computational methods for splice site prediction [PDF]

open access: yes, 2006
Taher L. Computational methods for splice site prediction. Bielefeld (Germany): Bielefeld University; 2006.Completing the genome sequence of a given organism is just the beginning of a series of subsequent tasks, namely, the discovery of the ...
Taher, Leila
core  

Examples of splice site polymorphisms.

open access: yes, 2018
The solid lines with numbers indicate splice junctions with a polymorphism in the donor or acceptor site, while the dashed lines with numbers indicate other “normal” splice junctions that share either the donor or acceptor sites with the polymorphic ...
Jinze Liu (383649)   +2 more
core   +1 more source

Structure‐forward targeting of claudins with synthetic binders

open access: yesFEBS Letters, EarlyView.
Claudins form the paracellular barriers between epithelial and endothelial tissues at tight junctions and are targets for molecular binders with the goal of modulating barrier permeability. Claudin‐binding molecules are relevant in drug delivery or in altering claudin interactions with disease‐causing proteins.
Alex J. Vecchio
wiley   +1 more source

A rare non-canonical splice site in Trema orientalis SYMRK does not affect its dual symbiotic functioning in endomycorrhiza and rhizobium nodulation

open access: yesBMC Plant Biology, 2023
Background Nitrogen-fixing nodules occur in ten related taxonomic lineages interspersed with lineages of non-nodulating plant species. Nodules result from an endosymbiosis between plants and diazotrophic bacteria; rhizobia in the case of legumes and ...
Sultan Alhusayni   +9 more
doaj   +1 more source

Splice site prediction software output.

open access: yes, 2014
The scores of the preprocessing models reflect the splice site strength. Abbreviations: HSF (Human Splice Finder), SP (Splice Port) and ASSP (Alternative Splice Site Predictor).
Gloria B. Aranda (591587)   +7 more
core   +1 more source

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