Genome-Wide Computational Analysis of Musa Microsatellites: Classification, Cross-Taxon Transferability, Functional Annotation, Association with Transposons & miRNAs, and Genetic Marker Potential. [PDF]
PLoS ONE, 2015 The development of organized, informative, robust, user-friendly, and freely accessible molecular markers is imperative to the Musa marker assisted breeding program.
Manosh Kumar Biswas +5 more
doaj +7 more sources
Identification of a Simple Sequence Repeat molecular-marker set for large-scale analyses of pear germplasm [PDF]
Crop Breeding and Applied Biotechnology, 2012 Simple Sequence Repeats (SSR) are molecular markers suitable to assess the genetic variation of germplasm resources; however, large-scale SSR use requires protocol optimization. The present work aimed to identify SSR markers, developed for pear and other
Gabriel Dequigiovanni +7 more
doaj +3 more sources
Identifying SSR Markers Related to Seed Fatty Acid Content in Perilla Crop (Perilla frutescens L.)
Plants, 2021 Perilla seed oil has been attracting attention in South Korea as a health food. Five fatty acids of 100 Perilla accessions were identified as follows: palmitic acid (PA) (5.10–9.13%), stearic acid (SA) (1.70–3.99%), oleic acid (OA) (11.1–21.9%), linoleic
Hyeon Park +4 more
doaj +1 more source
Czech Journal of Genetics and Plant Breeding, 2023 Simple sequence repeat (SSR) markers are valuable genetic and genomic research tools and are extensively used in major crops. However, a paucity of available molecular markers in lentils (Lens culinaris Medik.) has significantly hindered genomic studies ...
Melike Bakir +3 more
doaj +1 more source
The newly developed genomic-SSR markers uncover the genetic characteristics and relationships of olive accessions [PDF]
PeerJ, 2020 Background Olive (Olea europaea L.) is an important oil and fruit crop worldwide, owning a rich germplasm with a large number of cultivars. Simple sequence repeats (SSRs) are excellent markers and have been used for the identification of olive cultivars.
Danyang Li +7 more
doaj +2 more sources
Scientific Reports, 2022 Camellia chekiangoleosa is a popular variety of Oil-camellia that has high oil production and ornamental value. Microsatellite (SSR) markers are the preferred tool for the molecular marker-assisted breeding of C. chekiangoleosa.
Qianqian Tian +7 more
doaj +1 more source
Genome-Wide Analysis of Simple Sequence Repeats and Efficient Development of Polymorphic SSR Markers Based on Whole Genome Re-Sequencing of Multiple Isolates of the Wheat Stripe Rust Fungus. [PDF]
PLoS ONE, 2015 The biotrophic parasitic fungus Puccinia striiformis f. sp. tritici (Pst) causes stripe rust, a devastating disease of wheat, endangering global food security.
Huaiyong Luo +7 more
doaj +1 more source
Agriculture, 2023 India is blessed with an abundance of diverse rice landraces in its traditional cultivated areas. Two marker systems (simple sequence repeats (SSR) and single nucleotide polymorphism (SNP)) were used to study a set of 298 rice landrace accessions ...
Debjani Roy Choudhury +11 more
doaj +1 more source
Scientific Reports, 2023 The aim of this study was to evaluate drought tolerance and genetic relationships among some important chestnut cultivars for Türkiye by using drought-related genomic simple sequence repeat (SSR) markers and genic expressed sequence tag-simple sequence ...
Didem Kara, Emine Orhan
doaj +1 more source
Development and application of perfect SSR markers in cotton
Journal of Cotton Research, 2020 Background This study aimed to develop a set of perfect simple sequence repeat (SSR) markers with a single copy in the cotton genome, to construct a DNA fingerprint database suitable for authentication of cotton cultivars.
Yuzhen WU +7 more
doaj +1 more source