Results 81 to 90 of about 2,160,464 (190)

Bacterial and Archaeal Specific-Predation in the North Atlantic Basin

Frontiers in Marine Science, 2019
Stable isotope probing (SIP) was used to track prokaryotic and eukaryotic carbon uptake along a meridional transect (Long. 52°W) in the North Atlantic to assess if 13C-resource partitioning between bacteria and archaea and 13C-labeled eukaryotic ...
Lauren M. Seyler, Lauren M. Seyler, Steve Tuorto, Lora R. McGuinness, Donglai Gong, Lee J. Kerkhof   +5 more
doaj   +1 more source

Integrative Bioinformatics Approaches in Environmental Biotechnology: A Review

The Scientific World Journal, Volume 2026, Issue 1, 2026.
Environmental biotechnology increasingly relies on bioinformatics to address global challenges in pollution control or degradation, biodiversity conservation, and sustainable resource management. By integrating genomics, computational tools, and artificial intelligence, bioinformatics enables the analysis of complex biological datasets, such as ...
Yohannes Tsegay Teklay, Deepali Deepali
wiley   +1 more source

SIP‐SRS Imaging of Cell Wall Synthesis Identifies a Synergy between Micafungin and Amphotericin B

Advanced Science, Volume 12, Issue 48, December 29, 2025.
We employed glucose‐d7–based stable isotope probe‐assisted SRS microscopy (SIP‐SRS) C–D imaging to visualize fungal cell wall synthesis and remodeling under antifungal treatment. Amphotericin B (AmB) induced notable daughter cell wall thickening, prompting a combinational therapy with AmB and micafungin.
Meng Zhang, Yuewei Zhan, Haonan Lin, Jiyang Chen, Mohamed N. Seleem, Michael Mansour, Ji‐Xin Cheng   +6 more
wiley   +1 more source

Automated Data Extraction from In Situ Protein-Stable Isotope Probing Studies

, 2016
Protein-stable isotope probing (protein-SIP) has strong potential for revealing key metabolizing taxa in complex microbial communities. While most protein-SIP work to date has been performed under controlled laboratory conditions to allow extensive ...
Therese R. W. Clauss (1555573), David M. Ward (1837687), Christian G. Klatt (1837684), Richard D. Smith (39311), Mary S. Lipton (39313), Samuel H. Payne (175359), Gordon A. Anderson (1334940), Gordon W. Slysz (1348992), Laurey Steinke (1837690), Samuel O. Purvine (175349)   +9 more
core   +1 more source

Elucidating Syntrophic Butyrate-Degrading Populations in Anaerobic Digesters Using Stable-Isotope-Informed Genome-Resolved Metagenomics

mSystems, 2019
Linking the genomic content of uncultivated microbes to their metabolic functions remains a critical challenge in microbial ecology. Resolving this challenge has implications for improving our management of key microbial interactions in biotechnologies ...
Ryan M. Ziels, Masaru K. Nobu, Diana Z. Sousa   +2 more
doaj   +1 more source

When metagenomics meets stable-isotope probing: progress and perspectives

, 2010
The application of metagenomics, the culture-independent capture and subsequent analysis of genomic DNA from the environment, has greatly expanded our knowledge of the diversity of microbes and microbial protein families; however, the metabolic functions
Chen, Yin, Murrell, J. Colin, Murrell, J. C. (J. Colin), J. Colin Murrell, Yin Chen   +4 more
core   +1 more source

Single cell stable isotope probing in microbiology using Raman microspectroscopy. [PDF]

, 2016
Microbial communities are essential for most ecosystem processes and interact in highly complex ways with virtually all eukaryotes. Thus, a detailed understanding of the function of such communities is a fundamental prerequisite for microbial ecologists,
Wei E Huang, Michael Wagner, Yun Wang, Li Cui, Huang, Wei E., Wagner, Michael, Wang, Yun, Cui, Li   +7 more
core   +1 more source

Nanopore sequencing enables novel detection of deuterium incorporation in DNA

Computational and Structural Biotechnology Journal
Identifying active microbes is crucial to understand their role in ecosystem functions. Metabolic labeling with heavy, non-radioactive isotopes, i.e., stable isotope probing (SIP), can track active microbes by detecting heavy isotope incorporation in ...
Christian Höner zu Siederdissen, Jannes Spangenberg, Kevin Bisdorf, Sebastian Krautwurst, Akash Srivastava, Manja Marz, Martin Taubert   +6 more
doaj   +1 more source

DNA-based stable isotope probing coupled with cultivation methods implicates Methylophaga in hydrocarbon degradation.

Frontiers in Microbiology, 2014
Marine hydrocarbon-degrading bacteria perform a fundamental role in the oxidation and ultimate removal of crude oil and its petrochemical derivatives in coastal and open ocean environments.
Sara eMishamandani, Tony eGutierrez, Tony eGutierrez, Michael D Aitken   +3 more
doaj   +1 more source

Proteomic stable isotope probing with an upgraded Sipros algorithm for improved identification and quantification of isotopically labeled proteins

Microbiome
Background Proteomic stable isotope probing (SIP) is used in microbial ecology to trace a non-radioactive isotope from a labeled substrate into de novo synthesized proteins in specific populations that are actively assimilating and metabolizing the ...
Yi Xiong, Ryan S. Mueller, Shichao Feng, Xuan Guo, Chongle Pan   +4 more
doaj   +1 more source