Results 81 to 90 of about 122 (91)

Identification of Barley Enhancers across Genome via STARR-seq

2022
Abstract Enhancers are DNA sequences that can strengthen transcription initiation. However, the global identification of plant enhancers is complicated due to uncertainty in the distance and orientation of enhancers, especially in species with large genomes.
Wanlin Zhou, Haoran Shi, Zhiqiang Wang, Yuxin Huang, Lin Ni, Xudong Chen, Yan Liu, Haojie Li, Caixia Li, Yaxi Liu   +9 more
openaire   +1 more source

Shooting for the STARRs: A Modified STARR-Seq Assay for Rapid Identification and Evaluation of Plant Regulatory Sequences in Tobacco Leaves. [PDF]

Plant Cell, 2020
A single genome gives rise to different cell types and organs in response to precise temporal and spatial regulation of gene expression, driven by developmental and environmental cues.
Matthias Benoit
exaly   +4 more sources

Identification of Highly Repetitive Enhancers With Long-Range Regulation Potential in Barley via STARR-Seq.

Genomics, Proteomics and Bioinformatics
Abstract Enhancers are DNA sequences that can strengthen transcription initiation. However, the global identification of plant enhancers is complicated due to uncertainty in the distance and orientation of enhancers, especially in species with large genomes.
Yaxi Liu, Zhiqiang Wang, Wanlin Zhou
exaly   +3 more sources

Inference of Transcriptional Regulation From STARR-seq Data

Physical Review E
Abstract One of the primary regulatory processes in cells is transcription, during which RNA polymerase II (Pol-II) transcribes DNA into RNA. The binding of Pol-II to its site is regulated through interactions with transcription factors (TFs) that bind to DNA at enhancer cis-regulatory elements.
Amin Safaeesirat, Hoda Taeb, Emirhan Tekoglu, Tunc Morova, Nathan A. Lack, Eldon Emberly   +5 more
openaire   +2 more sources

Abstract 1280: Functional characterization of prostate cancer risk loci by SNPs-seq and STARR-seq

Cancer Research, 2017
Abstract Background. By SNP genotyping and RNA sequencing of 471 normal prostate samples, we recently created a prostate tissue-based eQTL dataset and identified significant eQTL signals at 51 prostate cancer risk loci. To functionally characterize these risk SNPs, we developed a massively parallel sequencing technology to screen SNPs ...
Peng Zhang, Jing Zhu, Sufyan Suleman, Yong-Chen Guo, Mei-Jun Du, Li-Dong Wang, Gong-Hong Wei, Liang Wang   +7 more
openaire   +1 more source

STARR-seq Library Preparation

Protocol Exchange, 2017
Felix Muerdter, Felix Muerdter, Łukasz M. Boryń, Ashley R. Woodfin, Christoph Neumayr, Martina Rath, Muhammad A. Zabidi, Michaela Pagani, Vanja Haberle, Tomáš Kazmar, Rui R. Catarino, Katharina Schernhuber, Cosmas D. Arnold, Alexander Stark   +13 more
openaire   +1 more source

pLatinum-STARR: новая STARR-seq платформа для функциональной характеристики регуляторных последовательностей

15-я международная мультиконференция
exaly   +2 more sources

Genome-Wide Prediction of Activating Regulatory Elements in Rice by Combining STARR-Seq With FACS

Plant Biotechnology Journal, 2022
Xinhao Ouyang, Xi Huang
exaly  

Challenges and Considerations for Reproducibility of STARR-Seq Assays

Genome Research, 2023
Santhosh Girirajan, Deepro Banerjee, Maitreya Das   +2 more
exaly  

ATAC-STARR-Seq Reveals Transcription Factor–Bound Activators and Silencers Within Chromatin-Accessible Regions of the Human Genome

Genome Research, 2022
Emily C. Hodges
exaly