Results 121 to 130 of about 9,010,138 (290)

Decoding the dynamic extracellular matrix in cancer—3D models and bioscaffolds rewire the rules of tumor progression

FEBS Letters, EarlyView.
Cancer progression is regulated by the dynamic matrix code of the tumor microenvironment, which influences cellular behavior and disease development. Importantly, matrix remodeling in three‐dimensional cancer models more accurately reflects in vivo conditions compared to conventional two‐dimensional systems.
Sylvia Mangani, Konstantinos Spanopoulos, Zoi Piperigkou, Nikos K. Karamanos   +3 more
wiley   +1 more source

Identification of a Shiga toxin A‐derived peptide internalized into Gb3 receptor‐bearing cells via interaction with the Shiga toxin B subunit

FEBS Letters, EarlyView.
The process of internalization of the Shiga toxin A subunit via formation of a complex with the Shiga toxin B subunit, which specifically binds to the Gb3 receptor. The peptide is designed to act as a carrier of drugs into cancer cells. Here, we explored the potential of peptides derived from the catalytic A subunit of Shiga toxin (STxA) to be drug ...
Giulia Opassi, João C. Encarnação, Valeria Napolitano, Grzegorz Dubin, Grzegorz Popowicz, Karl Andersson, U. Helena Danielson   +6 more
wiley   +1 more source

A dynamic mesh refinement in Physic-Informed Neural Networks for handling Stiff Partial Differential Equations

Alexandria Engineering Journal
Stiff Partial Differential Equations (PDEs) pose considerable challenges due to the presence of steep gradients, which often lead to large residuals when employing coarse training mesh grids, while excessively refined grids substantially increase ...
Nursyiva Irsalinda, Maharani A. Bakar, Fatimah Noor Harun, Ruwaidiah Idris, Sugiyarto Surono   +4 more
doaj   +1 more source

Stiff Circuit System Modeling via Transformer

CoRR
Accurate and efficient circuit behavior modeling is a cornerstone of modern electronic design automation. Among different types of circuits, stiff circuits are challenging to model using previous frameworks. In this work, we propose a new approach using Crossformer, which is a current state-of-the-art Transformer model for time-series prediction tasks,
Weiman Yan, Yi-Chia Chang, Wanyu Zhao
openaire   +2 more sources

Investigating transcription factor dynamics in health and disease using FRAP

FEBS Letters, EarlyView.
FRAP analysis of GFP‐tagged transcription factors reveals how molecular mobility and target engagement change in response to drug treatment. By combining live‐cell imaging, quantitative model fitting, and statistical analysis, this approach uncovers transcription factor dynamics linked to disease mechanisms, providing a powerful framework for ...
Kannan Govindaraj, Carolina Vazquez Garzon, Jose Joaquin Velasco, Janine N. Post   +3 more
wiley   +1 more source

Numerical methods for stiff systems [PDF]

, 2008
Some real-world applications involve situations where different physical phenomena acting on very different time scales occur simultaneously. The partial differential equations (PDEs) governing such situations are categorized as "stiff" PDEs. Stiffness is a challenging property of differential equations (DEs) that prevents conventional explicit ...
openaire   +1 more source

Conserved binding mode but diverse interfaces of MreC‐PBP2 interactions

FEBS Letters, EarlyView.
The crystal structure of abMreC reveals a conserved two β‐barrel architecture and provides structural insights into its role within the bacterial elongasome. The abMreC–abPBP2 complex model identifies the molecular basis of MreC‐mediated PBP2 recognition, contributing to the regulation of peptidoglycan synthesis.
Hyunseok Jang, Hyo Been Jin, Chang Min Kim, So Yeon Lee, Hyun Ho Park   +4 more
wiley   +1 more source

Microbiome‐blood–brain barrier interactions in aging — mechanisms and therapeutic potential

FEBS Letters, EarlyView.
Aging reshapes the gut microbiome (↓SCFA‐producing commensals; ↑pro‐inflammatory outputs), shifting circulating metabolites (↓SCFAs; ↑LPS, ↑TMAO, ↑PAA) that act at the BBB to increase nonspecific transcytosis, alter transport, and promote astrocyte reactivity, heightening brain vulnerability.
Daniel Cuervo‐Zanatta, Hari Baskar Balasubramanian, Amir Pasokh, Marietta Zille   +3 more
wiley   +1 more source

An epithelial GPR35 isoform supports tumor‐associated transcriptional and metabolic phenotypes

FEBS Letters, EarlyView.
GPR35 generates two functionally distinct isoforms with previously unresolved roles. GPR35‐short mediates immune‐cell chemotaxis, while GPR35‐long is enriched in colorectal cancer epithelium, where it supports increased metabolism, proliferation, and tumor‐associated transcriptional programs.
Jørgen D. Rønneberg, Martine Hjeltnes, Josephine Krieger, Joshua E. Elias, Maria Stensland, Kristian Holm, Xiaojun Jiang, Chuki Khangsar, Tuula A. Nyman, Arthur Kaser, Johannes R. Hov, Tom H. Karlsen, Nicole C. Kaneider, Frode L. Jahnsen, Georg Schneditz   +14 more
wiley   +1 more source

Physics informed neural networks for fluid flow analysis with repetitive parameter initialization

Scientific Reports
Physics-informed neural networks (PINNs) have been widely used to capture the behavior of physical systems governed by partial differential equations (PDEs), enabling the simulation of fluid dynamics across various scenarios.
Jongmok Lee, Seungmin Shin, Taewan Kim, Bumsoo Park, Ho Choi, Anna Lee, Minseok Choi, Seungchul Lee   +7 more
doaj   +1 more source