Results 151 to 160 of about 25,417,473 (341)
Degradation mechanism of the von Willebrand factor A2 domain by nattokinase
FEBS Letters, EarlyView.Nattokinase, a natto‐derived protease, exhibits potent antithrombotic effects. This study demonstrates that nattokinase directly cleaves the von Willebrand factor (vWF) A2 domain in vitro. Unlike the native regulator ADAMTS13, nattokinase degrades folded vWF independently of shear stress.
Ryuichi Hyakumoto +3 more
wiley +1 more source
Numerical methods for stiff systems [PDF]
, 2008 Some real-world applications involve situations where different physical phenomena acting on very different time scales occur simultaneously. The partial differential equations (PDEs) governing such situations are categorized as "stiff" PDEs. Stiffness is a challenging property of differential equations (DEs) that prevents conventional explicit ...
openaire +1 more source
Modulation of Homer1 EVH1 domain internal dynamics by putative autism‐associated mutations
FEBS Letters, EarlyView.The putative autism‐associated M65I and S97L variants of the EVH1 domain of the postsynaptic scaffold protein Homer1 do not exhibit substantial changes in their overall structure or partner binding. Both of them, but especially the M65I variant, show altered internal dynamics relative to the wild‐type domain on the μs‐ms timescale, indicated by the ...
Fanni Farkas +6 more
wiley +1 more source
Physics informed neural networks for fluid flow analysis with repetitive parameter initialization
Scientific ReportsPhysics-informed neural networks (PINNs) have been widely used to capture the behavior of physical systems governed by partial differential equations (PDEs), enabling the simulation of fluid dynamics across various scenarios.
Jongmok Lee +7 more
doaj +1 more source
Stiff Oscillatory Systems, Delta Jumps and White Noise
, 2001 Two model problems for stiff oscillatory systems are introduced. Both comprise a linear superposition of N AE 1 harmonic oscillators used as a forcing term for a scalar ODE.
E. Suli, Cano Stuart, B. Cano
core
The ubiquitin‐proteasome system and autophagy as guardians of the cellular proteome
FEBS Letters, EarlyView.This Perspective covers the three principles governing the crosstalk between the ubiquitin‐proteasome system and autophagy in cellular proteostasis: (1) a shared ubiquitin code routing substrates via shuttle factors or autophagy receptors; (2) spatial compartmentalization into phase‐separated degradation hubs and organelle‐specific modules (exemplified
Ivan Dikic
wiley +1 more source
FEBS Letters, EarlyView.An unexpected alternative interaction site for ethyl viologen was identified in formate dehydrogenase 1 from Methylorubrum extorquens. Combined mutagenesis, kinetic analysis, and docking revealed that aromatic residues near an iron–sulfur cluster enable flavin mononucleotide‐independent electron transfer, offering a framework for engineering improved ...
Eleni G. Poloniataki, Yong Hwan Kim
wiley +1 more source
FEBS Letters, EarlyView.The physical dimensions and shape of bacterial cells define the surface area available to acquire nutrients and the volume available for synthesizing proteins and DNA. Here, we use computational systems biology to decode the importance of cell geometry as a major determinant of prokaryotic phenotype, including growth rate and metabolic efficiency. This
Ross P. Carlson +6 more
wiley +1 more source
FEBS Letters, EarlyView.We present robust protocols for the preparation of supported lipid bilayers (SLBs) incorporating either Salmonella smooth LPS or outer membrane vesicles (OMVs). We use a combination of quartz crystal microbalance with dissipation (QCM‐D) and fluorescence microscopy to both characterize the SLBs of various compositions and to probe their interactions ...
Hudson P. Pace +6 more
wiley +1 more source
Explicit Implementation of Collocation Methods for Stiff Systems with Complex Spectrum [PDF]
, 2010 Currently there are two general ways to solve stiff differential equations numerically. The first approach is based on implicit methods and the second uses explicit stabilized Runge–Kutta methods, also known as Chebyshev methods.
Faleichik, B. V.
core