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Strategies for structure elucidation of small molecules based on LC–MS/MS data from complex biological samples

open access: goldComputational and Structural Biotechnology Journal, 2022
LC–MS/MS is a major analytical platform for metabolomics, which has become a recent hotspot in the research fields of life and environmental sciences. By contrast, structure elucidation of small molecules based on LC–MS/MS data remains a major challenge ...
Zhitao Tian   +4 more
doaj   +2 more sources

Leveraging infrared spectroscopy for automated structure elucidation [PDF]

open access: yesCommunications Chemistry
The application of machine learning models in chemistry has made remarkable strides in recent years. While analytical chemistry has received considerable interest from machine learning practitioners, its adoption into everyday use remains limited.
Marvin Alberts   +2 more
doaj   +2 more sources

Deep-learning structure elucidation from single-mutant deep mutational scanning [PDF]

open access: yesNature Communications
Deep learning has revolutionized the field of protein structure prediction. AlphaFold2, a deep neural network, vastly outperformed previous algorithms to provide near atomic-level accuracy when predicting protein structures.
Zachary C. Drake   +3 more
doaj   +2 more sources

ACD/Structure Elucidator: 20 Years in the History of Development

open access: yesMolecules, 2021
The first methods associated with the Computer-Assisted Structure Elucidation (CASE) of small molecules were published over fifty years ago when spectroscopy and computer science were both in their infancy.
Mikhail Elyashberg, Antony Williams
doaj   +1 more source

Structure Elucidation and Biosynthesis of Orobanchol

open access: yesFrontiers in Plant Science, 2022
Strigolactones (SLs), a class of phytohormones that regulate diverse developmental processes, were initially characterized as host-derived germination stimulants for seeds belonging to the genera Striga, Orobanche, and Phelipanche.
Takatoshi Wakabayashi   +2 more
doaj   +1 more source

Sherlock—A Free and Open-Source System for the Computer-Assisted Structure Elucidation of Organic Compounds from NMR Data

open access: yesMolecules, 2023
The structure elucidation of small organic molecules (
Michael Wenk   +2 more
doaj   +1 more source

Elucidating ‘undecipherable’ chemical structures using computer‐assisted structure elucidation approaches [PDF]

open access: yesMagnetic Resonance in Chemistry, 2012
Structure elucidation using 2D NMR data and application of traditional methods of structure elucidation are known to fail for certain problems. In this work, it is shown that computer‐assisted structure elucidation methods are capable of solving such problems.
Williams, Antony   +3 more
openaire   +2 more sources

Intermediates and shunt products of massiliachelin biosynthesis in Massilia sp. NR 4-1

open access: yesBeilstein Journal of Organic Chemistry, 2023
Siderophores are small molecules secreted by microorganisms in order to scavenge iron from the environment. An example is the thiazoline-containing natural product massiliachelin, which is produced by Massilia sp.
Till Steinmetz   +2 more
doaj   +1 more source

(2R,4S,5S)-5-Methoxy-4-methyl-3-oxohept-6-en-2-yl benzoate

open access: yesIUCrData, 2021
The title compound, C16H20O4, was synthesized in the course of the total synthesis of fusaequisin A in order to verify and confirm the configurations of the stereogenic centers and to exclude the possibility of epimerization during the methylation ...
Ann-Christin Schmidt   +2 more
doaj   +1 more source

Structure elucidation of polyheptazine imide by electron diffraction — a templated 2D carbon nitride networkw [PDF]

open access: yes, 2009
Structure elucidation of a condensed carbon IV) nitride with a stoichiometry close to C3N4 by electron diffraction reveals a two-dimensional planar heptazine-based network containing isolated melamine molecules in the trigonal ...
Döblinger, Markus   +5 more
core   +1 more source

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