Results 11 to 20 of about 42,189 (273)
OrthoClusterDB: an online platform for synteny blocks [PDF]
BMC Bioinformatics, 2009 Background The recent availability of an expanding collection of genome sequences driven by technological advances has facilitated comparative genomics and in particular the identification of synteny among multiple genomes.
Pei Jian +6 more
doaj +6 more sources
SyDiG: uncovering Synteny in Distant Genomes [PDF]
International Journal of Bioinformatics Research and Applications, 2011 Current methods for detecting synteny work well for genomes with high degrees of inter- and intra-species chromosomal homology, such as mammals. This paper presents a new algorithm for synteny computation that is well suited to genomes covering a large evolutionary span.
Macha Nikolski
exaly +4 more sources
Synteny plot quality control with SyntenyQC. [PDF]
BioinformaticsAbstract Summary SyntenyQC is a data pre-processing tool for the construction of synteny plots. It supports genomic data collection, annotation and dereplication to facilitate (and in some cases fundamentally enable) the construction of informative synteny plots.
Kirkwood TDJ +5 more
europepmc +6 more sources
Synteny Portal: a web-based application portal for synteny block analysis [PDF]
Nucleic Acids Research, 2016 Recent advances in next-generation sequencing technologies and genome assembly algorithms have enabled the accumulation of a huge volume of genome sequences from various species. This has provided new opportunities for large-scale comparative genomics studies.
Lee, Jongin +6 more
openaire +6 more sources
Predicting the Evolution of Syntenies—An Algorithmic Review [PDF]
Algorithms, 2021 Syntenies are genomic segments of consecutive genes identified by a certain conservation in gene content and order. The notion of conservation may vary from one definition to another, the more constrained requiring identical gene contents and gene orders,
Nadia El-Mabrouk
doaj +2 more sources
Functional Assessment of Orphan Proteins in the Streptomyces Pan-Proteome Through Genome-Wide Synteny Analysis [PDF]
MicroorganismsMembers of the genus Streptomyces possess large genomes, a vast and largely unexplored metabolic potential, and a distinctive life cycle characterized by pronounced morphological differentiation.
Matteo Calcagnile +2 more
doaj +2 more sources
Synteny Among Solanaceae Genomes
Compendium of Plant Genomes, 2016 The Solanaceae was among the first plant families to be analyzed via comparative mapping and thus was a pioneer in the realm of synteny studies. Analyses of chromosome content and organization have employed a range of techniques, including linkage mapping of genes and molecular markers, physical mapping via fluorescence in situ hybridization, and ...
Anne Frary, Sami DOĞANLAR, Frary Amy
exaly +3 more sources
Six De Novo Assemblies from Pathogenic and Nonpathogenic Strains of Fusarium oxysporum f. sp. niveum
PhytoFrontiers, 2022 Fusarium wilt, caused by Fusarium oxysporum f. sp. niveum (Fon), is a soilborne disease that significantly limits yield in watermelon (Citrullus lanatus) and occasionally causes the loss of an entire year's harvest.
James C. Fulton +5 more
doaj +1 more source
Horticulturae, 2021 Aluminum-activated malate transporters (ALMTs) have multiple potential roles in plant metabolism such as regulation of organic acids in fruits, movement of guard cells and inducing tolerance against aluminum stress.
Muhammad Moaaz Ali +7 more
doaj +1 more source
Agronomy, 2021 Phosphoenolpyruvate carboxylase (PEPC) genes have multiple potential roles in plant metabolism such as regulation and accumulation of organic acids in fruits, movement of guard cells and stress tolerance, etc.
Cao Zhi +8 more
doaj +1 more source