Results 41 to 50 of about 59,285 (253)

Comparative Analysis of GRAS Genes in Six Cucurbitaceae Species Provides Insights into Their Evolution and Function

Horticulturae, 2023
The Cucurbitaceae family comprises economically valuable vegetables such as cucumber, melon, and pumpkin. GRAS proteins, which are crucial transcription factors, play diverse roles in plant growth and development.
Qiqi Zhang, Cui Wang, Jun He, Yuanchao Xu, Hongbo Li, Tianshu Sun, Sen Chai, Hongjia Xin, Kuipeng Xu, Shan Mou, Zhonghua Zhang   +10 more
doaj   +1 more source

r2cat: synteny plots and comparative assembly [PDF]

Bioinformatics, 2009
Abstract Summary: Recent parallel pyrosequencing methods and the increasing number of finished genomes encourage the sequencing and investigation of closely related strains. Although the sequencing itself becomes easier and cheaper with each machine generation, the finishing of the genomes remains difficult.
Husemann, Peter, Stoye, Jens
openaire   +2 more sources

GenColors: Annotation and comparative genomics made easy [PDF]

, 2009
GenColors is a web-based software/database system initially aimed at an improved and accelerated annotation of prokaryotic genomes making extensive use of genome comparison (Romualdi et al., _Bioinformatics_ 2005; Romualdi et al., _Methods Mol.
Alessandro Romualdi, Gernot Gloeckner, Juergen Suehnel, Marius Felder, Matthias Platzer   +4 more
core   +2 more sources

Genome-Wide Identification and Characterization of Calcium Metabolism Related Gene Families in Arabidopsis thaliana and Their Regulation by Bacillus amyloliquefaciens Under High Calcium Stress

Frontiers in Plant Science, 2021
Several gene families involved in calcium signaling have been detected in plants, including calmodulin (CaM), calcium dependent protein kinases (CDPK), calcineurin B-like (CBL) and cyclic nucleotide-gated channels (CNGCs).
Jiyi Gong, Jiyi Gong, Tianlong Shi, Tianlong Shi, Yuke Li, Yuke Li, Hancheng Wang, Fei Li, Fei Li   +8 more
doaj   +1 more source

Genomic Features Of A Bumble Bee Symbiont Reflect Its Host Environment [PDF]

, 2014
Here, we report the genome of one gammaproteobacterial member of the gut microbiota, for which we propose the name >Candidatus Schmidhempelia bombi,> that was inadvertently sequenced alongside the genome of its host, the bumble bee, Bombus impatiens ...
Koch, Hauke, Magoc, Tanja, Martinson, Vincent G., Moran, Nancy A., Salzberg, Steven L.   +4 more
core   +1 more source

Dynamic Expression of Long Non-Coding RNAs Throughout Parasite Sexual and Neural Maturation in Schistosoma Japonicum

Non-Coding RNA, 2020
Schistosoma japonicum is a flatworm that causes schistosomiasis, a neglected tropical disease. S. japonicum RNA-Seq analyses has been previously reported in the literature on females and males obtained during sexual maturation from 14 to 28 days post ...
Lucas F. Maciel, David A. Morales-Vicente, Sergio Verjovski-Almeida   +2 more
doaj   +1 more source

Multidirectional chromosome painting substantiates the occurrence of extensive genomic reshuffling within Accipitriformes. [PDF]

, 2015
BACKGROUND: Previous cross-species painting studies with probes from chicken (Gallus gallus) chromosomes 1-10 and a paint pool of nineteen microchromosomes have revealed that the drastic karyotypic reorganization in Accipitridae is due to extensive ...
Beiyuan Fu, Bertrand Bed’Hom, Fengtang Yang, Gauthier Dobigny, Jinghuan Wang, Kai He, Malcolm A. Ferguson-Smith, Patricia C. M. O’Brien, Vitaly Volobouev, Weiting Su, Wenhui Nie   +10 more
core   +4 more sources

Genome-wide identification reveals unprecedented expansion and stress-responsive expression patterns of the lipoxygenase gene family in soybean (Glycine max L.)

Frontiers in Plant Science
BackgroundLipoxygenases (LOXs) catalyze polyunsaturated fatty acid oxygenation and regulate plant stress responses and oxylipin biosynthesis. This study provides comprehensive genome-wide characterization of the soybean LOX gene family, revealing ...
Sobhi F. Lamlom, Sobhi F. Lamlom, Sobhi F. Lamlom, Sobhi F. Lamlom, Sobhi F. Lamlom, Sobhi F. Lamlom, Taifeng Zhang, Taifeng Zhang, Taifeng Zhang, Taifeng Zhang, Yanbo Wang, Honglei Ren, Fuqiang Song, Guojun Feng, Guojun Feng   +14 more
doaj   +1 more source

Physical mapping integrated with syntenic analysis to characterize the gene space of the long arm of wheat chromosome 1A [PDF]

, 2013
Background: Bread wheat (Triticum aestivum L.) is one of the most important crops worldwide and its production faces pressing challenges, the solution of which demands genome information. However, the large, highly repetitive hexaploid wheat genome has
Akpınar, Bala Anı, Aydınoğlu, Fatma, Bellec, Arnaud, Berges, Helene, Budak, Hikmet, Cattonaro, Federica, Dolezel, Jaroslav, Frenkel, Zeev, Kantar, Melda, Korol, Abraham, Lucas, Stuart J., Magni, Federica, Safar, Jan, Simkova, Hana, Vautrin, Sonia, Weinstein, Zohar Bat-El   +15 more
core   +6 more sources

The rise and fall of breakpoint reuse depending on genome resolution

BMC Bioinformatics, 2011
Background During evolution, large-scale genome rearrangements of chromosomes shuffle the order of homologous genome sequences ("synteny blocks") across species.
Darling Aaron E, Attie Oliver, Yancopoulos Sophia   +2 more
doaj   +1 more source