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Approximate Tandem Repeats Computation
Proceedings of the 2017 International Conference on Information Technology, 2017In this paper, we present a linear-time algorithm to compute approximate tandem repeat in genomic sequences with the Longest Previous non-overlapping Factor (LPnF) table. The LPnF table is related to a certain type of Ziv-Lempel factorization in text compression that is an essential element for the design of efficient algorithms on strings.
Tida Butrak, Supaporn Chairungsee
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Short Tandem Repeats and Genetic Variation
2010Single nucleotide polymorphisms (SNPs) are widely distributed in the human genome and although most SNPs are the result of independent point-mutations, there are exceptions. When studying distances between SNPs, a periodic pattern in the distance between pairs of identical SNPs has been found to be heavily correlated with periodicity in short tandem ...
Madsen, Bo Eskerod +2 more
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2012
Hirabayashi and Kasai (1993) proposed designating galectin subfamilies as proto-, tandem-repeat, and chimera- types based on their domain organization. The prototype galectins (galectin-1, -2, -5, -7, -10, -11, -13, -14, and -15) consist of a single CRD with a short N-terminal sequence and have been discussed in Chap.
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Hirabayashi and Kasai (1993) proposed designating galectin subfamilies as proto-, tandem-repeat, and chimera- types based on their domain organization. The prototype galectins (galectin-1, -2, -5, -7, -10, -11, -13, -14, and -15) consist of a single CRD with a short N-terminal sequence and have been discussed in Chap.
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Molecular mechanisms underlying nucleotide repeat expansion disorders
Nature Reviews Molecular Cell Biology, 2021Indranil Malik +2 more
exaly
Repeat polymorphisms underlie top genetic risk loci for glaucoma and colorectal cancer
Cell, 2023Ronen E Mukamel +2 more
exaly
2007
Tandemly repeated sequences are ubiquitous components of both prokaryotic and eukaryotic genomes. Renowned examples of tandem repeats (TR) include micro-satellites, mini-satellites, or satellite DNA, as well as tandemly repeated genes. The evolutionary event that giveq rise to tandem repeats, tandem duplication, is major force that drives the formation
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Tandemly repeated sequences are ubiquitous components of both prokaryotic and eukaryotic genomes. Renowned examples of tandem repeats (TR) include micro-satellites, mini-satellites, or satellite DNA, as well as tandemly repeated genes. The evolutionary event that giveq rise to tandem repeats, tandem duplication, is major force that drives the formation
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Patterns of de novo tandem repeat mutations and their role in autism
Nature, 2021Ileena Mitra, Bonnie Huang, Nima Mousavi
exaly
Tandem repeat polymorphisms shape local adaptation
Trends in Ecology & EvolutionWithin widespread populations, efficient adaptation to local environmental conditions can be facilitated by abundant quantitative variation supplied by short tandem DNA repeats. The peculiar site-specific mutability of such repeats can provide populations with the functional equivalent of tuning knobs for adaptively adjusting quantitative trait values.
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