Results 21 to 30 of about 22,603,228 (311)

MOTIFATOR: detection and characterization of regulatory motifs using prokaryote transcriptome data [PDF]

, 2009
Summary: Unraveling regulatory mechanisms (e.g. identification of motifs in cis-regulatory regions) remains a major challenge in the analysis of transcriptome experiments.
Hijum, Sacha A.F.T. van, Blom, Evert-Jan, Hijum, Sacha A.F.T. van,, Kuipers, Oscar P.; id_orcid, Kuipers, Oscar P., Blom, Evert-Jan,, Roerdink, Jos B.T.M., Roerdink, Jos B.T.M.; id_orcid, S. A. F. T. van Hijum, Kuipers, Oscar P.,, Roerdink, Jos B.T.M.,, O. P. Kuipers, E.-J. Blom, J. B. T. M. Roerdink   +13 more
core   +2 more sources

Genome-wide identification, comprehensive characterization of transcription factors, cis-regulatory elements, protein homology, and protein interaction network of DREB gene family in Solanum lycopersicum

Frontiers in Plant Science, 2022
Tomato is a drought-sensitive crop which has high susceptibility to adverse climatic changes. Dehydration-responsive element-binding (DREB) are significant plant transcription factors that have a vital role in regulating plant abiotic stress tolerance by
Hajra Maqsood, Faiza Munir, Rabia Amir, Alvina Gul   +3 more
doaj   +1 more source

Transcriptome-wide RNA binding analysis of C9orf72 poly(PR) dipeptides.

, 2023
An intronic GGGGCC repeat expansion in C9orf72 is a common genetic cause of amyotrophic lateral sclerosis and frontotemporal dementia. The repeats are transcribed in both sense and antisense directions to generate distinct dipeptide repeat proteins, of ...
Stephen Martin (483345), Rickie Patani (259007), Rubika Balendra (3932894), Hana M Odeh (11382441), Idoia Glaria (9619610), Martina Hallegger (7475), James Shorter (42154), Agnieszka M Ule (16555833), Katherine M Wilson (16555830), Laura Masino (23134), Carmelo Milioto (404616), Adrian M Isaacs (9120230), Igor Ruiz de Los Mozos (16555827), Jernej Ule (115588)   +13 more
core   +1 more source

OmicSDK-Transcriptomics: A Web Platform for Transcriptomics Data Analysis

, 2023
Omics sciences, especially transcriptomics, have grown exponentially since the first human genome was sequenced in 2003. Different tools have been developed in the past years for the analysis of this kind of data, but many of them require specific programming knowledge to be used.
Aurora Sucre, Maria Martinez, Alba Garín-Muga   +2 more
openaire   +2 more sources

Scripts for pan-transcriptome

, 2021
These are the scripts used to create the pan-transcriptome and its translation, including:Blast based translation or longest ORF translationMerging transcripts Splitting artificially merged transcripts Functional counts (after GO or KEGG annotation).Full
Shifra Ben-Dor (10078009), Ester Feldmesser (439160)   +1 more
core   +1 more source

Transcriptome Analysis Reveals the Molecular Immunological Characteristics of Lesions in Patients with Halo Nevi When Compared to Stable Vitiligo, Normal Nevocytic Nevi and Cutaneous Melanoma

Journal of Inflammation Research, 2021
Chun Pan,1 Jingzhe Shang,2,3 Haiqin Jiang,1 Ying Shi,1 Wenyue Zhang,1 Jingshu Xiong,1 Youming Mei,1 Siyu Long,1 Gai Ge,1 Zhenzhen Wang,1 Ziwei Wu,1 Hongsheng Wang,1 Aiping Wu2,3 1Institute of Dermatology, Chinese Academy of Medical Sciences and Peking ...
Pan C, Shang J, Jiang H, Shi Y, Zhang W, Xiong J, Mei Y, Long S, Ge G, Wang Z, Wu Z, Wang H, Wu A   +12 more
doaj  

Nuclear RNA sequencing of the mouse erythroid cell transcriptome [PDF]

, 2012
Copyright @ 2012 The Authors. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source ...
Umlauf David, Catherine A. Moir (115926), Chakalova, L, Peter Fraser, Eskiw, CH, Mitchell, JA, Fraser, P, Mitchell Jennifer A., Schoenfelder, S, Umlauf, D, Clay Ieuan, Chakalova Lyubomira, David Umlauf (115924), Ieuan Clay, Jennifer A. Mitchell (32136), Schoenfelder Stefan, Chih-Yu Chen, Eskiw Christopher H., Stefan Schoenfelder, Ieuan Clay (115922), Chih-yu Chen (4730856), Fraser Peter, Takashi Nagano, Christopher H. Eskiw (115928), Takashi Nagano (115932), Christopher H Eskiw, Nagano Takashi, Lyubomira Chakalova, Nagano, T, Peter Fraser (32141), Stefan Schoenfelder (115930), Chen, CY, Moir, CA, Lyubomira Chakalova (23035), Chen Chih-yu, Jennifer A Mitchell, Clay, I, David Umlauf, Catherine A Moir, Moir Catherine A.   +39 more
core   +2 more sources

Direct Saliva Transcriptome Analysis [PDF]

Clinical Chemistry, 2011
BACKGROUND Current standard operating procedures for salivary transcriptomic analysis require low temperatures and lengthy mRNA isolation, which substantially hamper its use in the clinic. We developed a streamlined, ambient-temperature processing, stabilization, and storage protocol for clinical analysis of ...
Yu-Hsiang, Lee, Hui, Zhou, Jean K, Reiss, Xinmin, Yan, Lei, Zhang, David, Chia, David T W, Wong   +6 more
openaire   +2 more sources

The salt-responsive transcriptome of chickpea roots and nodules via deepSuperSAGE [PDF]

, 2011
Background: The combination of high-throughput transcript profiling and next-generation sequencing technologies is a prerequisite for genome-wide comprehensive transcriptome analysis.
Horres, Ralf, Kahl, G., Horres, R., Winter, Peter, Carlos Molina, Faheema Khan, Khan, Faheema, Jean-Jacques Drevon, Steinhauer, D., Peter Winter, Steinhauer, Diana, Diana Steinhauer, Nadia Fatnassi, Molina, Carlos, Rotter, Björn, Mainassara Zaman-Allah, Kahl, Günter, Rotter, B., Zaman-Allah, Mainassara, Ralf Horres, Khan, F., Fatnassi, N., Amenc, Laurie, Björn Rotter, Drevon, Jean-Jacques, Khal, Günter, Winter, P., Fatnassi, Nadia, Laurie Amenc, Günter Kahl   +29 more
core   +1 more source

Analysis of Global Gene Expression in Maize (Zea mays) Vegetative and Reproductive Tissues That Differ in Accumulation of Starch and Sucrose

Plants, 2022
Carbon allocation between vegetative and reproductive tissues impacts cereal grain production. Despite great agricultural importance, sink–source relationships have not been fully characterized at the early reproductive stages in maize. Here, we quantify
Cristal López-González, Sheila Juárez-Colunga, Samuel Trachsel, Nayelli Marsch-Martínez, C. Stewart Gillmor, Axel Tiessen   +5 more
doaj   +1 more source