Results 61 to 70 of about 2,371,477 (389)

Kernel-Segregated Transpose Convolution Operation [PDF]

arXiv, 2022
Transpose convolution has shown prominence in many deep learning applications. However, transpose convolution layers are computationally intensive due to the increased feature map size due to adding zeros after each element in each row and column.
arxiv  

TARP: Transposable Element Assembly Remapping Pipeline [PDF]

, 2020
Transposable elements are prolific throughout plant genomes and while originally regarded as nothing more than genetic parasites increasing number of studies have shown these elements to contribute significantly to the phenotypes of many significant ...
Holleman, Ethan
core   +1 more source

An age-of-allele test of neutrality for transposable element insertions [PDF]

, 2013
How natural selection acts to limit the proliferation of transposable elements (TEs) in genomes has been of interest to evolutionary biologists for many years.
Bergman, Casey M., Blumenstiel, Justin P., Chen, Xi, He, Miaomiao   +3 more
core   +2 more sources

Transposable elements: not as quiet as a mouse [PDF]

Genome Biology, 2012
In this issue of Genome Biology, Nellåker et al. show massive purging of deleterious transposable element variants, through negative selection, in 18 mouse strains.
Dixie L. Mager, Rita Rebollo, Rita Rebollo, Ying Zhang, Ying Zhang   +4 more
openaire   +7 more sources

MUSTv2: An Improved De Novo Detection Program for Recently Active Miniature Inverted Repeat Transposable Elements (MITEs)

Journal of Integrative Bioinformatics, 2017
Miniature inverted repeat transposable element (MITE) is a short transposable element, carrying no protein-coding regions. However, its high proliferation rate and sequence-specific insertion preference renders it as a good genetic tool for both natural ...
Ge Ruiquan, Mai Guoqin, Zhang Ruochi, Wu Xundong, Wu Qing, Zhou Fengfeng   +5 more
doaj   +1 more source

Regulatory regions in natural transposable element insertions drive interindividual differences in response to immune challenges in Drosophila

Genome Biology, 2021
Background Variation in gene expression underlies interindividual variability in relevant traits including immune response. However, the genetic variation responsible for these gene expression changes remains largely unknown.
Anna Ullastres, Miriam Merenciano, Josefa González   +2 more
doaj   +1 more source

Transpose symmetry of the Jones Matrix and topological phases [PDF]

Opt. Lett. 33 (2008) 854-856, 2008
The transmission Jones matrix of an arbitrary stack of reciprocal plane parallel plates which has been turned through 180 degrees about an axis in the plane of the stack is, in an appropriate basis, the transpose of the transmission matrix of the unturned slab with a change in the sign of the off-diagonal elements.
arxiv   +1 more source

The CACTA transposon Bot1 played a major role in Brassica genome divergence and gene proliferation [PDF]

, 2008
We isolated and characterized a Brassica C genome-specific CACTA element, which was designated Bot1 (Brassica oleracea transposon 1). After analysing phylogenetic relationships, copy numbers and sequence similarity of Bot1 and Bot1 analogues in B ...
AGI, Arabidopsis Genome Initiative, Alix, Alix, Alix, Bandelt, Bateman, Bennetzen, Brunner, Casacuberta, Cui, Darling, DeMarco, Deragon, Edgar, Eichler, Fedoroff, Feschotte, Gaeta, Gish, Grandbastien, Hawkins, He, Heslop-Harrison, IHGSC, Inaba, Inagaki, Itoh, Jacobs, Jiang, Johnston, Kapitonov, Kapitonov, Kawasaki, Kazazian, Kubis, Kubis, Kuhn, Kurtz, Le, Leflon, Lenoir, Lysak, Maddison, Meyers, Miura, Morgante, Morgante, Nacken, Nicolas, Ozeki, O’Neill, Pereira, Peterson, Posada, Rocarro, Rodríguez, Schwarzacher, Shiba, Snowden, Snowdon, Sonnhammer, Strachan, Suzuki, Swofford, Talbert, Town, Turcotte, U, Vicient, Walbot, Wang, Wendel, Wicker, Wicker, Yang, Yang, Yu, Zabala, Zabala, Zhang, Zhang   +80 more
core   +1 more source

Transposable element expression in tumors is associated with immune infiltration and increased antigenicity

Nature Communications, 2019
Profound global loss of DNA methylation is a hallmark of many cancers. One potential consequence of this is the reactivation of transposable elements (TEs) which could stimulate the immune system via cell-intrinsic antiviral responses.
Yu Kong, Christopher M. Rose, Ashley A. Cass, Alexander Williams, Martine Darwish, Steve Lianoglou, Peter M. Haverty, Ann-Jay Tong, C. Blanchette, M. Albert, I. Mellman, R. Bourgon, J. Greally, S. Jhunjhunwala, Haiyin Chen-Harris   +14 more
semanticscholar   +1 more source

Stem loop sequences specific to transposable element IS605 are found linked to lipoprotein genes in Borrelia plasmids. [PDF]

PLoS ONE, 2009
BACKGROUND:Plasmids of Borrelia species are dynamic structures that contain a large number of repetitive genes, gene fragments, and gene fusions. In addition, the transposable element IS605/200 family, as well as degenerate forms of this IS element, are ...
Nicholas Delihas
doaj   +1 more source