Results 1 to 10 of about 576,766 (119)

The International Virus Bioinformatics Meeting 2022

Viruses, 2022
The International Virus Bioinformatics Meeting 2022 took place online, on 23–25 March 2022, and has attracted about 380 participants from all over the world.
Franziska Hufsky, Denis Beslic, Dimitri Boeckaerts, Sebastian Duchene, Enrique González-Tortuero, Andreas J. Gruber, Jiarong Guo, Daan Jansen, John Juma, Kunaphas Kongkitimanon, Antoni Luque, Muriel Ritsch, Gabriel Lencioni Lovate, Luca Nishimura, Célia Pas, Esteban Domingo, Emma Hodcroft, Philippe Lemey, Matthew B. Sullivan, Friedemann Weber, Fernando González-Candelas, Sarah Krautwurst, Alba Pérez-Cataluña, Walter Randazzo, Gloria Sánchez, Manja Marz   +25 more
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A framework for real-time monitoring, analysis and adaptive sampling of viral amplicon nanopore sequencing

Frontiers in Genetics, 2023
The ongoing SARS-CoV-2 pandemic demonstrates the utility of real-time sequence analysis in monitoring and surveillance of pathogens. However, cost-effective sequencing requires that samples be PCR amplified and multiplexed via barcoding onto a single ...
Rory Munro, Nadine Holmes, Christopher Moore, Matthew Carlile, Alexander Payne, John R. Tyson, Thomas Williams, Christopher Alder, Luke B. Snell, Gaia Nebbia, Roberto Santos, Matt Loose   +11 more
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Molecular Characteristics of Enterovirus B83 Strain Isolated from a Patient with Acute Viral Myocarditis and Global Transmission Dynamics

Viruses, 2023
This study determined the global genetic diversity and transmission dynamics of enterovirus B83 (EV-B83) and proposed future disease surveillance directions.
Juan Song, Huanhuan Lu, Lin Ma, Shuangli Zhu, Dongmei Yan, Jun Han, Yong Zhang   +6 more
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The origin of biased sequence depth in sequence-independent nucleic acid amplification and optimization for efficient massive parallel sequencing. [PDF]

PLoS ONE, 2013
Sequence Independent Single Primer Amplification is one of the most widely used random amplification approaches in virology for sequencing template preparation.
Toon Rosseel, Steven Van Borm, Frank Vandenbussche, Bernd Hoffmann, Thierry van den Berg, Martin Beer, Dirk Höper   +6 more
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Machine Learning Prediction of Adenovirus D8 Conjunctivitis Complications from Viral Whole-Genome Sequence

Ophthalmology Science, 2022
Objective: To obtain complete DNA sequences of adenoviral (AdV) D8 genome from patients with conjunctivitis and determine the relation of sequence variation to clinical outcomes.
Kenji Nakamichi, Lakshmi Akileswaran, PhD, Thomas Meirick, MD, Michele D. Lee, MD, James Chodosh, MD, Jaya Rajaiya, PhD, David Stroman, PhD, Alejandro Wolf-Yadlin, PhD, Quinn Jackson, W. Bradley Holtz, Aaron Y. Lee, MD, Cecilia S. Lee, MD, Russell N. Van Gelder, MD, PhD, Gregg J. Berdy, James D. Branch, El-Roy Dixon, Sherif M. El-Harazi, Jack V. Greiner, Joshua Herz, Larry L. Lothringer, Damien Macaluso, Andrew L. Moyes, George Nardin, Bernard R. Perez, Lawerence E. Roel, Syamala H.K. Reddy, Stephanie Becker, Neil Shmunes, Stephen Smith, Michael Tepedino, Jonathan Macy, Prashant Garg, Nivedita Patil, Yasmin Bhagat, Malavika Krishnaswamy, Nagappa Somshekhar, Manisha Acharya, Shree Kumar Reddy, Mary Abraham, Shobha Kini, Nita Shanbag, P.N. Biswas, Virendra Agarwal, Anshu Sahai, P.S. Girija Devi, Vupputuri Venkata Lakshmi, Narasimha Rao, Radhika Tandon, Priti Kapadia, Deepak Mehta, Anju Kochar, Adriana dos Santos Forseto, Rubens Belfort, Jr., Jacob Moyses Cohen, Ramon Coral Ghanem, Roberta De Ventura, Sergio Luis Gianotti Pimentel, Sergio Kwitko, Maria Cristina Nishiwaki Dantas, Anna Maria Hofling-Lima, Walton Nose, D. Wariyapola, M. Wijetunge, Charith Fonseka, Champa Banagala, K.A. Salvin, D.R. Kodikara   +66 more
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Characterization of alfalfa virus F, a new member of the genus Marafivirus. [PDF]

PLoS ONE, 2018
Viral infections of alfalfa are widespread in major cultivation areas and their impact on alfalfa production may be underestimated. A new viral species, provisionally named alfalfa virus F (AVF), was identified using a virion-associated nucleic acid ...
Lev G Nemchinov, Sarah François, Phillipe Roumagnac, Mylène Ogliastro, Rosemarie W Hammond, Dimitre S Mollov, Denis Filloux   +6 more
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A new potyvirus isolated from Pennisetum alopecuroides with the potential to infect cereal crops

Phytopathology Research, 2021
Pennisetum plants (Pennisetum alopecuroides L.), displaying a dwarfing phenotype along with delayed flowering and mosaic symptom on leaves, were found in Beijing, China.
Xuedong Liu, Xi Chen, Sijia Liu, Kaitong Du, Pei Wang, Tong Jiang, Mengji Cao, Xiangdong Li, Zaifeng Fan, Tao Zhou   +9 more
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Genesis of avian influenza H9N2 in Bangladesh

Emerging Microbes and Infections, 2014
Avian influenza subtype H9N2 is endemic in many bird species in Asia and the Middle East and has contributed to the genesis of H5N1, H7N9 and H10N8, which are potential pandemic threats.
Karthik Shanmuganatham, Mohammed M Feeroz, Lisa Jones-Engel, David Walker, SMRabiul Alam, MKamrul Hasan, Pamela McKenzie, Scott Krauss, Richard J Webby, Robert G Webster   +9 more
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Genotype/subgenotype distribution of hepatitis B virus among hemodialysis patients with chronical hepatitis B

Annals of Hepatology, 2012
Introduction. Hepatitis B virus (HBV) infection in hemodialysis (HD) patients is a major concern, but limited information exists on the HBV genotyping in patients on maintenance HD in Turkey.Aim.
Murat Sayan, M.D., Cengiz Dogan
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De novo assembly of highly diverse viral populations

BMC Genomics, 2012
Background Extensive genetic diversity in viral populations within infected hosts and the divergence of variants from existing reference genomes impede the analysis of deep viral sequencing data.
Yang Xiao, Charlebois Patrick, Gnerre Sante, Coole Matthew G, Lennon Niall J, Levin Joshua Z, Qu James, Ryan Elizabeth M, Zody Michael C, Henn Matthew R   +9 more
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