Viral Metagenomics for Identification of Emerging Viruses in Transfusion Medicine [PDF]
Viruses, 2022 Viral metagenomics has revolutionized our understanding for identification of unknown or poorly characterized viruses. For that reason, metagenomic studies gave been largely applied for virus discovery in a wide variety of clinical samples, including ...
Svetoslav Nanev Slavov
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Viral Metagenomics as a Tool to Track Sources of Fecal Contamination: A One Health Approach [PDF]
Viruses, 2023 The One Health framework recognizes that human, animal, and environmental health are linked and highly interdependent. Fecal contamination of water, soil, foodstuff, and air may impact many aspects of One Health, and culture, PCR-based, and sequencing ...
Tasha M. Santiago-Rodriguez +1 more
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A comparative study of flow cytometry‐sorted communities and shotgun viral metagenomics in a Singapore municipal wastewater treatment plant [PDF]
iMeta, 2022 Traditional or “bulk” viral enrichment and amplification methods used in viral metagenomics introduce unavoidable bias in viral diversity. This bias is due to shortcomings in existing viral enrichment methods and overshadowing by the more abundant viral ...
Xiaoqiong Gu +10 more
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Genome binning of viral entities from bulk metagenomics data
Nature Communications, 2022 Here, Johansen et al. develop an approach, Phages from Metagenomics Binning (PHAMB), that allows the binning of thousands of viral genomes directly from bulk metagenomics data, while simultaneously enabling clustering of viral genomes into accurate ...
Joachim Johansen +10 more
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Unraveling the viral dark matter through viral metagenomics [PDF]
Frontiers in Immunology, 2022 Viruses are part of the microbiome and have essential roles in immunology, evolution, biogeochemical cycles, health, and disease progression. Viruses influence a wide variety of systems and processes, and the continued discovery of novel viruses is ...
Tasha M. Santiago-Rodriguez +1 more
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Enhanced Viral Metagenomics with Lazypipe 2 [PDF]
Viruses, 2023 Viruses are the main agents causing emerging and re-emerging infectious diseases. It is therefore important to screen for and detect them and uncover the evolutionary processes that support their ability to jump species boundaries and establish ...
Ilya Plyusnin +4 more
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Exploring Viral Metagenomics in Pediatric Patients with Acute Respiratory Infections: Unveiling Pathogens beyond SARS-CoV-2 [PDF]
Microorganisms, 2023 The emergence of SARS-CoV-2 and the subsequent pandemic have prompted extensive diagnostic and clinical efforts to mitigate viral spread. However, these strategies have largely overlooked the presence of other respiratory viruses.
Gabriel Montenegro de Campos +16 more
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MetLab: An In Silico Experimental Design, Simulation and Analysis Tool for Viral Metagenomics Studies. [PDF]
PLoS ONE, 2016 Metagenomics, the sequence characterization of all genomes within a sample, is widely used as a virus discovery tool as well as a tool to study viral diversity of animals.
Martin Norling +4 more
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Viral Metagenomics for the Identification of Emerging Infections in Clinical Samples with Inconclusive Dengue, Zika, and Chikungunya Viral Amplification [PDF]
Viruses, 2022 Viral metagenomics is increasingly being used for the identification of emerging and re-emerging viral pathogens in clinical samples with unknown etiology.
Juliana Vanessa Cavalcante Souza +15 more
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Comparative Viral Metagenomics of Environmental Samples from Korea [PDF]
Genomics & Informatics, 2013 The introduction of metagenomics into the field of virology has facilitated the exploration of viral communities in various natural habitats. Understanding the viral ecology of a variety of sample types throughout the biosphere is important per se, but ...
Min-Soo Kim, Tae Woong Whon, Jin-Woo Bae
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