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Genome Binning of Viral Entities From Bulk Metagenomics Data

open access: yesNature Communications, 2022
Here, Johansen et al. develop an approach, Phages from Metagenomics Binning (PHAMB), that allows the binning of thousands of viral genomes directly from bulk metagenomics data, while simultaneously enabling clustering of viral genomes into accurate ...
Søren J Sørensen   +2 more
exaly   +3 more sources

Viral Metagenomics for Identification of Emerging Viruses in Transfusion Medicine

open access: yesViruses, 2022
Viral metagenomics has revolutionized our understanding for identification of unknown or poorly characterized viruses. For that reason, metagenomic studies gave been largely applied for virus discovery in a wide variety of clinical samples, including ...
Svetoslav Nanev Slavov
exaly   +4 more sources

Comparative Viral Metagenomics of Environmental Samples from Korea [PDF]

open access: yesGenomics & Informatics, 2013
The introduction of metagenomics into the field of virology has facilitated the exploration of viral communities in various natural habitats. Understanding the viral ecology of a variety of sample types throughout the biosphere is important per se, but ...
Min-Soo Kim, Tae Woong Whon, Jin-Woo Bae
doaj   +3 more sources

A Comparative Study of Flow Cytometry-Sorted Communities and Shotgun Viral Metagenomics in a Singapore Municipal Wastewater Treatment Plant

open access: yesiMeta, 2022
Traditional or “bulk” viral enrichment and amplification methods used in viral metagenomics introduce unavoidable bias in viral diversity. This bias is due to shortcomings in existing viral enrichment methods and overshadowing by the more abundant viral ...
Fang You, Federica Armas, Feijian Mao
exaly   +2 more sources

Viral Metagenomics as a Tool to Track Sources of Fecal Contamination: A One Health Approach

open access: yesViruses, 2023
The One Health framework recognizes that human, animal, and environmental health are linked and highly interdependent. Fecal contamination of water, soil, foodstuff, and air may impact many aspects of One Health, and culture, PCR-based, and sequencing ...
Tasha M Santiago-Rodriguez   +1 more
exaly   +3 more sources

Successional Stages in Infant Gut Microbiota Maturation

open access: yesmBio, 2021
Disturbances in the primary colonization of the infant gut can result in lifelong consequences and have been associated with a range of host conditions. Although early-life factors have been shown to affect infant gut microbiota development, our current ...
Leen Beller   +16 more
doaj   +3 more sources

The Emerging Role of the Gut Virome in Health and Inflammatory Bowel Disease: Challenges, Covariates and a Viral Imbalance

open access: yesViruses, 2023
Virome research is a rapidly growing area in the microbiome field that is increasingly associated with human diseases, such as inflammatory bowel disease (IBD).
Daan Jansen, Jelle Matthijnssens
doaj   +1 more source

Establishment of Culex modestus in Belgium and a Glance into the Virome of Belgian Mosquito Species

open access: yesmSphere, 2021
Culex ...
Lanjiao Wang   +6 more
doaj   +1 more source

Stable distinct core eukaryotic viromes in different mosquito species from Guadeloupe, using single mosquito viral metagenomics

open access: yesMicrobiome, 2019
Background Mosquitoes are the most important invertebrate viral vectors in humans and harbor a high diversity of understudied viruses, which has been shown in many mosquito virome studies in recent years.
Chenyan Shi   +7 more
doaj   +1 more source

A Previously Undescribed Highly Prevalent Phage Identified in a Danish Enteric Virome Catalog

open access: yesmSystems, 2021
Through generation of the DEVoC, we added numerous previously uncharacterized viral genomes and genes to the ever-increasing worldwide pool of human gut viromes.
Lore Van Espen   +21 more
doaj   +3 more sources

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