Results 11 to 20 of about 30,780 (255)

Genome binning of viral entities from bulk metagenomics data

Nature Communications, 2022
Here, Johansen et al. develop an approach, Phages from Metagenomics Binning (PHAMB), that allows the binning of thousands of viral genomes directly from bulk metagenomics data, while simultaneously enabling clustering of viral genomes into accurate ...
Joachim Johansen, Damian R. Plichta, Jakob Nybo Nissen, Marie Louise Jespersen, Shiraz A. Shah, Ling Deng, Jakob Stokholm, Hans Bisgaard, Dennis Sandris Nielsen, Søren J. Sørensen, Simon Rasmussen   +10 more
doaj   +2 more sources

Gut metagenomics goes viral [PDF]

Nature Reviews Microbiology, 2010
Interest in the human intestinal microbiota has intensified in recent years, but research has been largely focused on bacteriology. This month's Genome Watch reviews a recent metagenomics study that instead aims to better characterize the viruses that inhabit our guts.
Alan Walker
openaire   +3 more sources

Viral Metagenomics Reveals Widely Diverse Viral Community of Freshwater Amazonian Lake [PDF]

Frontiers in Public Health, 2022
Despite the importance of understanding the ecology of freshwater viruses, there are not many studies on the subject compared to marine viruses.
Wylerson Guimarães Nogueira, Bruna Verônica Azevedo Gois, Kenny da Costa Pinheiro, Andressa de Oliveira Aragão, Ana Lídia Cavalcante Queiroz, Artur Luiz da Silva, Adriana Carneiro Folador, Rommel Thiago Jucá Ramos   +7 more
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Pathology and viral metagenomics, a recent history [PDF]

Medecine sciences : M/S, 2013
Human, animal and plant viral pathologies have greatly benefited from recent metagenomics development. Viral metagenomics is a culture-independent approach used to investigate the complete viral genetic populations of a sample.
Albina, Emmanuel, Bernardo, Pauline, Eloit, Marc, Fernandez, Emmanuel, Filloux, Denis, Roumagnac, Philippe   +5 more
core   +3 more sources

Successional Stages in Infant Gut Microbiota Maturation

mBio, 2021
Disturbances in the primary colonization of the infant gut can result in lifelong consequences and have been associated with a range of host conditions. Although early-life factors have been shown to affect infant gut microbiota development, our current ...
Leen Beller, Ward Deboutte, Gwen Falony, Sara Vieira-Silva, Raul Yhossef Tito, Mireia Valles-Colomer, Leen Rymenans, Daan Jansen, Lore Van Espen, Maria Ioanna Papadaki, Chenyan Shi, Claude Kwe Yinda, Mark Zeller, Karoline Faust, Marc Van Ranst, Jeroen Raes, Jelle Matthijnssens   +16 more
doaj   +3 more sources

The Emerging Role of the Gut Virome in Health and Inflammatory Bowel Disease: Challenges, Covariates and a Viral Imbalance

Viruses, 2023
Virome research is a rapidly growing area in the microbiome field that is increasingly associated with human diseases, such as inflammatory bowel disease (IBD).
Daan Jansen, Jelle Matthijnssens
doaj   +1 more source

Establishment of Culex modestus in Belgium and a Glance into the Virome of Belgian Mosquito Species

mSphere, 2021
Culex ...
Lanjiao Wang, Ana Lucia Rosales Rosas, Lander De Coninck, Chenyan Shi, Johanna Bouckaert, Jelle Matthijnssens, Leen Delang   +6 more
doaj   +1 more source

Unbiased RNA shotgun metagenomics in social and solitary wild bees detects associations with eukaryote parasites and new viruses [PDF]

, 2016
The diversity of eukaryote organisms and viruses associated with wild bees remains poorly characterized in contrast to the well-documented pathosphere of the western honey bee, Apis mellifera.
Braeckman, Bart, de Graaf, Dirk, De Smet, Lina, Schoonvaere, Karel, Smagghe, Guy, Vierstraete, Andy   +5 more
core   +7 more sources

Comparative Viral Metagenomics of Environmental Samples from Korea [PDF]

Genomics & Informatics, 2013
The introduction of metagenomics into the field of virology has facilitated the exploration of viral communities in various natural habitats. Understanding the viral ecology of a variety of sample types throughout the biosphere is important per se, but ...
Min-Soo Kim, Tae Woong Whon, Jin-Woo Bae
doaj   +1 more source

Viral Metagenomics on Cerebrospinal Fluid [PDF]

Genes, 2019
Identifying the causative pathogen in central nervous system (CNS) infections is crucial for patient management and prognosis. Many viruses can cause CNS infections, yet screening for each individually is costly and time-consuming. Most metagenomic assays can theoretically detect all pathogens, but often fail to detect viruses because of their small ...
Arthur W. D. Edridge, Martin Deijs, Ingeborg E. van Zeggeren, Cormac M. Kinsella, Maarten F. Jebbink, Margreet Bakker, Diederik van de Beek, Matthijs C. Brouwer, Lia van der Hoek   +8 more
openaire   +3 more sources