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Viral Metagenomics: MetaView Software [PDF]

, 2007
The purpose of this report is to design and develop a tool for analysis of raw sequence read data from viral metagenomics experiments. The tool should compare read sequences of known viral nucleic acid sequence data and enable a user to attempt to determine, with some degree of confidence, what virus groups may be present in the sample.
Zhou, Carol, Smith, Jason
openaire   +3 more sources

Gut metagenomics goes viral [PDF]

Nature Reviews Microbiology, 2010
Interest in the human intestinal microbiota has intensified in recent years, but research has been largely focused on bacteriology. This month's Genome Watch reviews a recent metagenomics study that instead aims to better characterize the viruses that inhabit our guts.
Alan W Walker, Walker Alan
exaly   +2 more sources

Successional Stages in Infant Gut Microbiota Maturation

mBio, 2021
Disturbances in the primary colonization of the infant gut can result in lifelong consequences and have been associated with a range of host conditions. Although early-life factors have been shown to affect infant gut microbiota development, our current ...
Leen Beller, Ward Deboutte, Gwen Falony, Sara Vieira-Silva, Raul Yhossef Tito, Mireia Valles-Colomer, Leen Rymenans, Daan Jansen, Lore Van Espen, Maria Ioanna Papadaki, Chenyan Shi, Claude Kwe Yinda, Mark Zeller, Karoline Faust, Marc Van Ranst, Jeroen Raes, Jelle Matthijnssens   +16 more
doaj   +3 more sources

The Emerging Role of the Gut Virome in Health and Inflammatory Bowel Disease: Challenges, Covariates and a Viral Imbalance

Viruses, 2023
Virome research is a rapidly growing area in the microbiome field that is increasingly associated with human diseases, such as inflammatory bowel disease (IBD).
Daan Jansen, Jelle Matthijnssens
doaj   +1 more source

Utilizing Viral Metagenomics to Characterize Pathogenic and Commensal Viruses in Pediatric Patients with Febrile Neutropenia. [PDF]

Viruses
Febrile neutropenia (FN) is one of the most common complications in pediatric oncology patients. It has a complex etiologic nature, which in the majority of cases remains unclear.
Sarana da Silva A, de Campos GM, Altizani GM, de Carvalho E, Barros AC, Cella E, Kashima S, Sampaio SC, Elias MC, Giovanetti M, Scrideli CA, Slavov SN.   +11 more
europepmc   +2 more sources

Rapid and Sensitive Single-Sample Viral Metagenomics using Nanopore Flongle Sequencing.

Journal of Virological Methods, 2023
The ability of viral metagenomic Next-Generation Sequencing (mNGS) to unbiasedly detect nucleic acids in a clinical sample is a powerful tool for advanced diagnosis of viral infections. When clinical symptoms do not provide a clear differential diagnosis,
Ian Pichler, S. Schmutz, Gabriela Ziltener, M. Zaheri, V. Kufner, A. Trkola, M. Huber   +6 more
semanticscholar   +1 more source

Establishment of Culex modestus in Belgium and a Glance into the Virome of Belgian Mosquito Species

mSphere, 2021
Culex ...
Lanjiao Wang, Ana Lucia Rosales Rosas, Lander De Coninck, Chenyan Shi, Johanna Bouckaert, Jelle Matthijnssens, Leen Delang   +6 more
doaj   +1 more source

A Previously Undescribed Highly Prevalent Phage Identified in a Danish Enteric Virome Catalog

mSystems, 2021
Through generation of the DEVoC, we added numerous previously uncharacterized viral genomes and genes to the ever-increasing worldwide pool of human gut viromes.
Lore Van Espen, Emilie Glad Bak, Leen Beller, Lila Close, Ward Deboutte, Helene Bæk Juel, Trine Nielsen, Deniz Sinar, Lander De Coninck, Christine Frithioff-Bøjsøe, Cilius Esmann Fonvig, Suganya Jacobsen, Maria Kjærgaard, Maja Thiele, Anthony Fullam, Michael Kuhn, Jens-Christian Holm, Peer Bork, Aleksander Krag, Torben Hansen, Manimozhiyan Arumugam, Jelle Matthijnssens   +21 more
doaj   +3 more sources

Rapid screening and identification of viral pathogens in metagenomic data

BMC Medical Genomics, 2021
Background Virus screening and viral genome reconstruction are urgent and crucial for the rapid identification of viral pathogens, i.e., tracing the source and understanding the pathogenesis when a viral outbreak occurs.
Shiyang Song, Liangxiao Ma, Xintian Xu, Han Shi, Xuan Li, Yuanhua Liu, Pei Hao   +6 more
doaj   +1 more source

Rapid viral metagenomics using SMART-9N amplification and nanopore sequencing

Wellcome Open Research, 2021
Emerging and re-emerging viruses are a global health concern. Genome sequencing as an approach for monitoring circulating viruses is currently hampered by complex and expensive methods.
I. Claro, M. Ramundo, T. Coletti, Camila A. M. Silva, I. N. Valença, D. Candido, F. C. Sales, E. Manuli, J. G. Jesus, Anderson Vicente de Paula, A. Felix, P. S. Andrade, M. C. Pinho, W. M. Souza, M. Amorim, J. L. Proença‐Módena, E. Kallás, J. Levi, Nuno R. Faria, E. Sabino, N. Loman, J. Quick   +21 more
semanticscholar   +1 more source