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VIROME: Downloading libraries of VIROME data v1
, 2015 This tutorial explainshow to download entire libraries of data from the VIROME web application. Wommack, K. E., J. Bhavsar, S. W. Polson, J. Chen, M. Dumas, S. Srinivasiah, M. Furman, S. Jamindar, and D. J. Nasko. 2012. VIROME: a standard operating procedure for analysis of viral metagenome sequences.Jaysheel Bhavsar, not provided Shawn Polson, not provided K. Eric Wommack +2 moreopenaire +2 more sourcesPolymicrobial periodontal disease triggers a wide radius of effect and unique virome. [PDF]
, 2020 Periodontal disease is a microbially-mediated inflammatory disease of tooth-supporting tissues that leads to bone and tissue loss around teeth. Although bacterially-mediated mechanisms of alveolar bone destruction have been widely studied, the effects of Gao, Li, Ho, Sunita P, Kamarajan, Pachiyappan, Kang, Misun, Kapila, Yvonne L, Kuraji, Ryutaro, Le, Charles, Martinez, April, Rangé, Hélène, Reza Sailani, M, Ye, Changchang, Zhan, Ling, Zhang, Martin Jinye +12 morecore Extensive gut virome variation and its associations with host and environmental factors in a population-level cohort
Nature Communications, 2022 Indigenous bacteriophage communities (virome) in the human gut have a huge impact on the structure and function of gut bacterial communities (bacteriome), but virome variation at a population scale is not fully investigated yet.Suguru Nishijima, N. Nagata, Yuya Kiguchi, Y. Kojima, T. Miyoshi-Akiyama, Motoi Kimura, M. Ohsugi, K. Ueki, S. Oka, M. Mizokami, T. Itoi, T. Kawai, N. Uemura, M. Hattori +13 moresemanticscholar +1 more sourceEndophytic Virome [PDF]
, 2019 AbstractEndophytic microorganisms are well established for their mutualistic relationship and plant growth promotion through production of different metabolites. Bacteria and fungi are the major group of endophytes which were extensively studied. Virus are badly named for centuries and their symbiotic relationship was vague. Recent development of omics Das, Saurav, Barooah, Madhumita, Thakur, Nagendra +2 moreopenaire +1 more sourceRespiratory eukaryotic virome expansion and bacteriophage deficiency characterize childhood asthma
Scientific Reports, 2023 Asthma development and exacerbation is linked to respiratory virus infections. There is limited information regarding the presence of viruses during non-exacerbation/infection periods.Spyridon Megremis, Bede Constantinides, Paraskevi Xepapadaki, Chuan Fu Yap, Alexandros G. Sotiropoulos, Claus Bachert, Susetta Finotto, Tuomas Jartti, Avraam Tapinos, Tytti Vuorinen, Evangelos Andreakos, David L. Robertson, Nikolaos G. Papadopoulos +12 moredoaj +1 more sourcePlasma virome dynamics in chronic hepatitis B virus infected patients
Frontiers in Microbiology, 2023 The virome remains an understudied domain of the human microbiome. The role of commensal viruses on the outcome of infections with known pathogens is not well characterized.Marijn Thijssen, Frank Tacke, Lore Van Espen, David Cassiman, Mahmoud Naser Aldine, Frederik Nevens, Marc Van Ranst, Jelle Matthijnssens, Mahmoud Reza Pourkarim, Mahmoud Reza Pourkarim, Mahmoud Reza Pourkarim +10 moredoaj +1 more sourcePhylogenetic position and genetic features of HIV-1 in CNS
Журнал микробиологии, эпидемиологии и иммунобиологииBackground. Due to the wide coverage with antiretroviral therapy, the life expectancy of HIV infected people has significantly increased. Against the background of a decrease in mortality from HIV infection, HIV-associated neurocognitive disorders, which Mikhail V. Piterskiy, Oleg A. Khodakov, Tatyana V. Mikheeva, Natalia V. Bilalova, Alena B. Konkova-Reidman, Yuliya A. Zakharova, Aleksandr V. Semenov +6 moredoaj +1 more sourceBlood DNA virome associates with autoimmune diseases and COVID-19
Nature GeneticsAberrant immune responses to viral pathogens contribute to pathogenesis, but our understanding of pathological immune responses caused by viruses within the human virome, especially at a population scale, remains limited.Noa Sasa, Shohei Kojima, Rie Koide, Takanori Hasegawa, H. Namkoong, T. Hirota, Rei Watanabe, Yuumi Nakamura, Eri Oguro-Igashira, K. Ogawa, Tomohiro Yata, K. Sonehara, Kenichi Yamamoto, T. Kishikawa, S. Sakaue, R. Edahiro, Y. Shirai, Y. Maeda, T. Nii, S. Chubachi, Hiromu Tanaka, Haruka Yabukami, A. Suzuki, K. Nakajima, Noriko Arase, Takashi Okamoto, R. Nishikawa, S. Namba, Tatsuhiko Naito, I. Miyagawa, Hiroaki Tanaka, M. Ueno, Y. Ishitsuka, Junichi Furuta, K. Kunimoto, I. Kajihara, S. Fukushima, H. Miyachi, Hiroyuki Matsue, M. Kamata, Mami Momose, T. Bito, Hiroshi Nagai, Tetsuya Ikeda, Tatsuya Horikawa, Atsuko Adachi, Tsukasa Matsubara, K. Ikumi, E. Nishida, Ikuma Nakagawa, Mayu Yagita-Sakamaki, M. Yoshimura, Shiro Ohshima, Makoto Kinoshita, S. Ito, T. Arai, M. Hirose, Yoshinori Tanino, T. Nikaido, T. Ichiwata, S. Ohkouchi, T. Hirano, Toshinori Takada, Ryushi Tazawa, K. Morimoto, Masahiro Takaki, Satoshi Konno, Masaru Suzuki, K. Tomii, A. Nakagawa, T. Handa, K. Tanizawa, Haruyuki Ishii, M. Ishida, Toshiyuki Kato, Naoya Takeda, K. Yokomura, Takashi Matsui, Akifumi Uchida, H. Inoue, K. Imaizumi, Yasuhiro Goto, H. Kida, T. Fujisawa, T. Suda, Takashi Yamada, Yasuomi Satake, H. Ibata, M. Saigusa, Toshihiro Shirai, Nobuyuki Hizawa, Koh Nakata, Qingbo S. Ho Ryunosuke Takayoshi Eigo Kotoe Masahiro Yasu Wang Lee Saiki Hyugaji Shimizu Katayama Kanai Kato, Qingbo S. Wang, Ho Lee, R. Saiki, Takayoshi Hyugaji, Eigo Shimizu, K. Katayama, Masahiro Kanai, Yasuhiro Kato, T. Morita, Kazuhisa Takahashi, Norihiro Harada, Toshio Naito, M. Hiki, Y. Matsushita, Haruhi Takagi, Masako Ichikawa, Ai Nakamura, S. Harada, Y. Sandhu, H. Kabata, Katsunori Masaki, H. Kamata, S. Ikemura, S. Okamori, Hideki Terai, A. Morita, Takanori Asakura, Junichi Sasaki, Hiroshi Morisaki, Y. Uwamino, K. Nanki, S. Uchida, S. Uno, T. Nishimura, Takashri Ishiguro, T. Isono, S. Shibata, Y. Matsui, C. Hosoda, K. Takano, T. Nishida, Yoichi Kobayashi, Yotaro Takaku, N. Takayanagi, S. Ueda, Ai Tada, M. Miyawaki, Masao Yamamoto, Eriko Yoshida, Reina Hayashi, T. Nagasaka, Sawako Arai, Yutaro Kaneko, Kana Sasaki, Etsuko Tagaya, Masatoshi Kawana, Ken Arimura, Kunihiko Takahashi, T. Anzai, Satoshi Ito, Akifumi Endo, Y. Uchimura, Yasunari Miyazaki, T. Honda, T. Tateishi, S. Tohda, N. Ichimura, K. Sonobe, C. Sassa, J. Nakajima, Yasushi Nakano, Yukiko Nakajima, R. Anan, Ryosuke Arai, Y. Kurihara, Yuko Harada, K. Nishio, Tetsuya Ueda, Masanori Azuma, R. Saito, Toshikatsu Sado, Y. Miyazaki, Ryuichi Sato, Yuki Haruta, T. Nagasaki, Yoshinori Yasui, Yoshinori Hasegawa, Y. Mutoh, T. Kimura, Tomonori Sato, R. Takei, Satoshi Hagimoto, Yoichiro Noguchi, Y. Yamano, H. Sasano, Sho Ota, Y. Nakamori, Kazuhisa Yoshiya, Fukuki Saito, T. Yoshihara, D. Wada, Hiromu Iwamura, S. Kanayama, Shuhei Maruyama, T. Yoshiyama, Ken Ohta, H. Kokuto, Hideo Ogata, Yoshiaki Tanaka, K. Arakawa, M. Shimoda, T. Osawa, H. Tateno, I. Hase, S. Yoshida, S. Suzuki, Miki Kawada, Hirohisa Horinouchi, Fumitake Saito, Keiko Mitamura, Masao Hagihara, J. Ochi, Tomoyuki Uchida, R. Baba, D. Arai, Takayuki Ogura, H. Takahashi, S. Hagiwara, Genta Nagao, Shunichiro Konishi, I. Nakachi, K. Murakami, M. Yamada, Hisatoshi Sugiura, Hirohito Sano, S. Matsumoto, Nozomu Kimura, Yoshinao Ono, H. Baba, Yusuke Suzuki, Sohei Nakayama, Keita Masuzawa, T. Shiroyama, Y. Noda, T. Niitsu, Y. Adachi, T. Enomoto, Saori Amiya, Reina Hara, Y. Yamaguchi, Teruaki Murakami, T. Kuge, Kinnosuke Matsumoto, Yuji Yamamoto, Makoto Yamamoto, Midori Yoneda, K. Tomono, Kazuto Kato, H. Hirata, Y. Takeda, Hidefumi Koh, T. Manabe, Y. Funatsu, Fumimaro Ito, T. Fukui, Keisuke Shinozuka, S. Kohashi, Masatoshi Miyazaki, Tomohisa Shoko, Mitsuaki Kojima, Tomohiro Adachi, Motonao Ishikawa, Kenichiro Takahashi, T. Inoue, Toshiyuki Hirano, Keigo Kobayashi, H. Takaoka, Kazuyoshi Watanabe, Naoki Miyazawa, Yasuhiro Kimura, Reiko Sado, H. Sugimoto, Akane Kamiya, N. Kuwahara, Akiko Fujiwara, T. Matsunaga, Yoko Sato, Takenori Okada, Yoshihiro Hirai, H. Kawashima, Atsuya Narita, Kazuki Niwa, Yoshiyuki Sekikawa, K. Nishi, M. Nishitsuji, M. Tani, Junya Suzuki, Hiroki Nakatsumi, T. Ogura, H. Kitamura, E. Hagiwara, Kota Murohashi, H. Okabayashi, Takao Mochimaru, Shigenari Nukaga, Ryosuke Satomi, Y. Oyamada, Nobuaki Mori, Tomoya Baba, Yasutaka Fukui, Mitsuru Odate, Shuko Mashimo, Yasushi Makino, K. Yagi, M. Hashiguchi, J. Kagyo, T. Shiomi, S. Fuke, Hiroshi Saito, T. Tsuchida, Shigeki Fujitani, Mumon Takita, Daiki Morikawa, Toru Yoshida, T. Izumo, Minoru Inomata, N. Kuse, Nobuyasu Awano, M. Tone, Akihiro Ito, Yoshihiko Nakamura, Kota Hoshino, Junichi Maruyama, Hiroyasu Ishikura, Tohru Takata, T. Odani, M. Amishima, Takeshi Hattori, Y. Shichinohe, Takashi Kagaya, T. Kita, K. Ohta, Satoru Sakagami, Kiyoshi Koshida, Kentaro Hayashi, Tetsuo Shimizu, Y. Kozu, H. Hiranuma, Yasuhiro Gon, Namiki Izumi, Kaoru Nagata, Ken Ueda, Reiko Taki, S. Hanada, K. Kawamura, K. Ichikado, K. Nishiyama, Hiroyuki Muranaka, Kazunori Nakamura, N. Hashimoto, Keiko Wakahara, Sakamoto Koji, Norihito Omote, A. Ando, N. Kodama, Yasunari Kaneyama, Shunsuke Maeda, T. Kuraki, Takemasa Matsumoto, Koutaro Yokote, T. Nakada, Ryuzo Abe, T. Oshima, Tadanaga Shimada, Masahiro Harada, Takeshi Takahashi, Hiroshi Ono, Toshihiro Sakurai, Takayuki Shibusawa, Y. Kimizuka, A. Kawana, T. Sano, C. Watanabe, R. Suematsu, Hisako Sageshima, A. Yoshifuji, K. Ito, Saeko Takahashi, K. Ishioka, M. Nakamura, Makoto Masuda, Aya Wakabayashi, Hiroki Watanabe, Suguru Ueda, Masanori Nishikawa, Y. Chihara, May Takeuchi, Keisuke Onoi, Jun Shinozuka, Atsushi Sueyoshi, Yoji Nagasaki, Masaki Okamoto, Sayoko Ishihara, M. Shimo, Yoshihisa Tokunaga, Yu Kusaka, T. Ohba, S. Isogai, Aki Ogawa, T. Inoue, Satoru Fukuyama, Yoshihiro Eriguchi, Akiko Yonekawa, Keiko Kan-o, Koichiro Matsumoto, K. Kanaoka, S. Ihara, K. Komuta, Yoshiaki Inoue, Shigeru Chiba, K. Yamagata, Yuji Hiramatsu, H. Kai, K. Asano, Tsuyoshi Oguma, Y. Ito, Satoru Hashimoto, Masaki Yamasaki, Y. Kasamatsu, Y. Komase, Naoya Hida, T. Tsuburai, Baku Oyama, Minoru Takada, Hidenori Kanda, Yuichiro Kitagawa, Tetsuya Fukuta, Takahito Miyake, S. Yoshida, Shinji Ogura, Shinji Abe, Yutaka Kono, Y. Togashi, H. Takoi, Ryota Kikuchi, Shinichi Ogawa, Tomouki Ogata, Shoichiro Ishihara, A. Kanehiro, Shinji Ozaki, Yasuko Fuchimoto, S. Wada, Nobukazu Fujimoto, K. Nishiyama, M. Terashima, Satoru Beppu, Kosuke Yoshida, O. Narumoto, Hideaki Nagai, N. Ooshima, M. Motegi, Akira Umeda, Kazuya Miyagawa, H. Shimada, Mayu Endo, Yoshiyuki Ohira, M. Watanabe, S. Inoue, A. Igarashi, M. Sato, H. Sagara, Akihiko Tanaka, S. Ohta, T. Kimura, Yoko Shibata, H. Minemura, Yuki Sato, Yuichirou Yamada, T. Hashino, Masato Shinoki, H. Iwagoe, Hiroshi Takahashi, Kazuhiko Fujii, Hiroto Kishi, Masayuki Kanai, Tomonori Imamura, Tatsuya Yamashita, Masakiyo Yatomi, T. Maeno, Shinichi Hayashi, Mai Takahashi, M. Kuramochi, I. Kamimaki, Y. Tominaga, Tomoo Ishii, M. Utsugi, Akihiro Ono, Toru Tanaka, T. Kashiwada, Kazue Fujita, Y. Saito, M. Seike, Hiroko Watanabe, H. Matsuse, N. Kodaka, C. Nakano, T. Oshio +499 moresemanticscholar +1 more source
