BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes [PDF]
Molecular biology and evolution, 2021 Methods for evaluating the quality of genomic and metagenomic data are essential to aid genome assembly procedures and to correctly interpret the results of subsequent analyses.
M. Manni +4 more
semanticscholar +1 more source
3DALL-E: Integrating Text-to-Image AI in 3D Design Workflows [PDF]
Conference on Designing Interactive Systems, 2022 Text-to-image AI are capable of generating novel images for inspiration, but their applications for 3D design workflows and how designers can build 3D models using AI-provided inspiration have not yet been explored.
Vivian Liu +3 more
semanticscholar +1 more source
Enabling Dynamic and Intelligent Workflows for HPC, Data Analytics, and AI Convergence [PDF]
Future generations computer systems, 2022 The evolution of High-Performance Computing (HPC) platforms enables the design and execution of progressively larger and more complex workflow applications in these systems.
J. Ejarque +36 more
semanticscholar +1 more source
How do Data Science Workers Collaborate? Roles, Workflows, and Tools [PDF]
Proc. ACM Hum. Comput. Interact., 2020 Today, the prominence of data science within organizations has given rise to teams of data science workers collaborating on extracting insights from data, as opposed to individual data scientists working alone. However, we still lack a deep understanding
Amy X. Zhang +2 more
semanticscholar +1 more source
AiiDA 1.0, a scalable computational infrastructure for automated reproducible workflows and data provenance [PDF]
Scientific Data, 2020 The ever-growing availability of computing power and the sustained development of advanced computational methods have contributed much to recent scientific progress. These developments present new challenges driven by the sheer amount of calculations and
Sebastiaan P. Huber +21 more
semanticscholar +1 more source
Journal of Clinical Microbiology, 2022 Next-generation sequencing (NGS) workflows applied to bronchoalveolar lavage (BAL) fluid specimens could enhance the detection of respiratory pathogens, although optimal approaches are not defined.
David C. Gaston +8 more
semanticscholar +1 more source
Gotree/Goalign: toolkit and Go API to facilitate the development of phylogenetic workflows
bioRxiv, 2021 Besides computer intensive steps, phylogenetic analysis workflows are usually composed of many small, reccuring, but important data manipulations steps.
F. Lemoine, O. Gascuel
semanticscholar +1 more source
A Community Roadmap for Scientific Workflows Research and Development [PDF]
Works, 2021 The landscape of workflow systems for scientific applications is notoriously convoluted with hundreds of seemingly equivalent workflow systems, many isolated research claims, and a steep learning curve.
Rafael Ferreira da Silva +27 more
semanticscholar +1 more source
Workflows in AiiDA: Engineering a high-throughput, event-based engine for robust and modular computational workflows [PDF]
arXiv.org, 2020 Over the last two decades, the field of computational science has seen a dramatic shift towards incorporating high-throughput computation and big-data analysis as fundamental pillars of the scientific discovery process.
M. Uhrin +4 more
semanticscholar +1 more source
Nature Communications, 2021 Metaproteomics has matured into a powerful tool to assess functional interactions in microbial communities. While many metaproteomic workflows are available, the impact of method choice on results remains unclear.
T. Van Den Bossche +44 more
semanticscholar +1 more source