Results 21 to 30 of about 481 (117)

Lanthanide-Dependent Methanol and Formaldehyde Oxidation in Methylobacterium aquaticum Strain 22A

Microorganisms, 2020
Lanthanides (Ln) are an essential cofactor for XoxF-type methanol dehydrogenases (MDHs) in Gram-negative methylotrophs. The Ln3+ dependency of XoxF has expanded knowledge and raised new questions in methylotrophy, including the differences in ...
Patcha Yanpirat, Yukari Nakatsuji, Shota Hiraga, Yoshiko Fujitani, Terumi Izumi, Sachiko Masuda, Ryoji Mitsui, Tomoyuki Nakagawa, Akio Tani   +8 more
doaj   +1 more source

Phylogeny and Metabolic Potential of the Methanotrophic Lineage MO3 in Beijerinckiaceae from the Paddy Soil through Metagenome-Assembled Genome Reconstruction

Microorganisms, 2022
Although the study of aerobic methane-oxidizing bacteria (MOB, methanotrophs) has been carried out for more than a hundred years, there are many uncultivated methanotrophic lineages whose metabolism is largely unknown.
Yuanfeng Cai, Juanli Yun, Zhongjun Jia
doaj   +1 more source

A Novel Moderately Thermophilic Facultative Methylotroph within the Class Alphaproteobacteria

Microorganisms, 2021
Methylotrophic bacteria (non-methanotrophic methanol oxidizers) consuming reduced carbon compounds containing no carbon–carbon bonds as their sole carbon and energy source have been found in a great variety of environments.
Tajul Islam, Marcela Hernández, Amare Gessesse, J. Colin Murrell, Lise Øvreås   +4 more
doaj   +1 more source

Metabolism-linked methylotaxis sensors responsible for plant colonization in Methylobacterium aquaticum strain 22A

Frontiers in Microbiology, 2023
Motile bacteria take a competitive advantage in colonization of plant surfaces to establish beneficial associations that eventually support plant health.
Akio Tani, Sachiko Masuda, Sachiko Masuda, Yoshiko Fujitani, Toshiki Iga, Yuuki Haruna, Shiho Kikuchi, Wang Shuaile, Haoxin Lv, Shiori Katayama, Hiroya Yurimoto, Yasuyoshi Sakai, Junichi Kato   +12 more
doaj   +1 more source

Genome-Resolved Proteomic Stable Isotope Probing of Soil Microbial Communities Using 13CO2 and 13C-Methanol

Frontiers in Microbiology, 2019
Stable isotope probing (SIP) enables tracking the nutrient flows from isotopically labeled substrates to specific microorganisms in microbial communities. In proteomic SIP, labeled proteins synthesized by the microbial consumers of labeled substrates are
Zhou Li, Zhou Li, Zhou Li, Qiuming Yao, Xuan Guo, Alexander Crits-Christoph, Melanie A. Mayes, William Judson Hervey IV, Sarah L. Lebeis, Jillian F. Banfield, Jillian F. Banfield, Gregory B. Hurst, Robert L. Hettich, Robert L. Hettich, Chongle Pan, Chongle Pan, Chongle Pan   +16 more
doaj   +1 more source

The expanded diversity of methylophilaceae from Lake Washington through cultivation and genomic sequencing of novel ecotypes. [PDF]

PLoS ONE, 2014
We describe five novel Methylophilaceae ecotypes from a single ecological niche in Lake Washington, USA, and compare them to three previously described ecotypes, in terms of their phenotype and genome sequence divergence.
David A C Beck, Tami L McTaggart, Usanisa Setboonsarng, Alexey Vorobev, Marina G Kalyuzhnaya, Natalia Ivanova, Lynne Goodwin, Tanja Woyke, Mary E Lidstrom, Ludmila Chistoserdova   +9 more
doaj   +1 more source

Characterization of a novel cytochrome c as the electron acceptor of XoxF-MDH in the thermoacidophilic methanotroph Methylacidiphilum fumariolicum SolV [PDF]

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, 2019
Methanotrophs play a prominent role in the global carbon cycle, by oxidizing the potent greenhouse gas methane to CO2. Methane is first converted into methanol by methane monooxygenase. This methanol is subsequently oxidized by either a calcium-dependent MxaF-type or a lanthanide-dependent XoxF-type methanol dehydrogenase (MDH). Electrons from methanol
Versantvoort, Wouter, Pol, Arjan, Daumann, Lena J., Larrabee, James A., Strayer, Aidan H., Jetten, Mike S.M., van Niftrik, Laura, Reimann, Joachim, Op den Camp, Huub J.M.   +8 more
openaire   +2 more sources

Natural Selection in Synthetic Communities Highlights the Roles of Methylococcaceae and Methylophilaceae and Suggests Differential Roles for Alternative Methanol Dehydrogenases in Methane Consumption

Frontiers in Microbiology, 2017
We describe experiments that follow species dynamics and gene expression patterns in synthetic bacterial communities including species that compete for the single carbon substrate supplied, methane, and species unable to consume methane, which could only
Zheng Yu, David A. C. Beck, David A. C. Beck, Ludmila Chistoserdova   +3 more
doaj   +1 more source

Siderophore for Lanthanide and Iron Uptake for Methylotrophy and Plant Growth Promotion in Methylobacterium aquaticum Strain 22A

Frontiers in Microbiology, 2022
Methylobacterium and Methylorubrum species are facultative methylotrophic bacteria that are abundant in the plant phyllosphere. They have two methanol dehydrogenases, MxaF and XoxF, which are dependent on either calcium or lanthanides (Lns), respectively.
Patrick Otieno Juma, Yoshiko Fujitani, Ola Alessa, Tokitaka Oyama, Hiroya Yurimoto, Yasuyoshi Sakai, Akio Tani   +6 more
doaj   +1 more source

Versatile methanotrophs form an active methane biofilter in the oxycline of a seasonally stratified coastal basin

Environmental Microbiology, Volume 25, Issue 11, Page 2277-2288, November 2023., 2023
Abstract The potential and drivers of microbial methane removal in the water column of seasonally stratified coastal ecosystems and the importance of the methanotrophic community composition for ecosystem functioning are not well explored. Here, we combined depth profiles of oxygen and methane with 16S rRNA gene amplicon sequencing, metagenomics and ...
Jessica Venetz, Olga M. Żygadłowska, Wytze K. Lenstra, Niels A. G. M. van Helmond, Guylaine H. L. Nuijten, Anna J. Wallenius, Paula Dalcin Martins, Caroline P. Slomp, Mike S. M. Jetten, Annelies J. Veraart   +9 more
wiley   +1 more source