Results 41 to 50 of about 1,073,094 (328)

KnotInFrame: prediction of –1 ribosomal frameshift events [PDF]

, 2008
Theis C, Reeder J, Giegerich R. KnotInFrame: prediction of –1 ribosomal frameshift events. Nucleic Acids Research. 2008;36(18):6013-6020.Programmed –1 ribosomal frameshift (–1 PRF) allows for alternative reading frames within one mRNA.
Corinna Theis, Theis, Corinna, Jens Reeder, Robert Giegerich, Reeder, Jens, Giegerich, Robert   +5 more
core   +1 more source

Analysis of the bacterial communities in the rhizosphere of Chrysanthemum via denaturing gradient gel electrophoresis of PCR- amplified 16S rRNA as well as DNA fragments coding for 16S rRNA [PDF]

, 2001
The effect of developing chrysanthemum roots on the presence and activity of bacterial populations in the rhizosphere was examined by using culture-independent methods.
Anneke Keijzer, Van Elsas, J.D., Duineveld, B.M., Kowalchuk, G.A., Van Veen, J.A., George A. Kowalchuk, Jan Dirk van Elsas, Keijzer, A., Veen, J.A., van, Bernadette M. Duineveld, Elsas, J.D., van, Johannes A. van Veen   +11 more
core   +1 more source

Differential polyadenylation of ribosomal RNA during post-transcriptional processing in Leishmania. [PDF]

, 2005
The protozoan parasite Leishmania belongs to the most ancient eukaryotic lineages and this is reflected in several distinctive biological features, such as eukaryotic polycistronic transcription and RNA trans-splicing.
Laurent, T., Chappuis, F., Llanos-Cuentas, A., Llanos-Cuentas, A, V. YARDLEY, F. CHAPPUIS, Laurent, T, T. LAURENT, Dujardin, J. C., Vandesompele, J, J.-C. DUJARDIN, DE DONCKER, S, S. RIJAL, Decuypere, S., S. DECUYPERE, Yardley, V, De Donckeri, S, Vandesompele, Jo, Rijal, S., J. AREVALO, Vandesompele, J., S. DE DONCKER, J. VANDESOMPELE, Yardley, V., Chappuis, F, Arevalo, J., Arevalo, J, Rijal, S, De Doncker, S., A. LLANOS-CUENTAS, Dujardin, JC, Decuypere, S   +31 more
core   +1 more source

Metaxa : a software tool for automated detection and discrimination among ribosomal small subunit (12S/16S/18S) sequences of archaea, bacteria, eukaryotes, mitochondria, and chloroplasts in metagenomes and environmental sequencing datasets [PDF]

, 2011
Peer ...
Belle Damodara Shenoy, Hartmann, Martin, Alm Rosenblad, Magnus, Kessy Abarenkov, Nilsson, R. Henrik,, Wang, Zheng, Zheng, Wang, Alm Rosenblad, Magnus,, Eriksson, Martin, Petri, Anna,, Rosenblad, Magnus Alm, Grelet, Gwen-Aelle, Abarenkov, Kessy, Johan Bengtsson, Eriksson, K. Martin, Shenoy, Belle Damodara, Zheng Wang, Nilsson, R. Henrik, Gwen-Aëlle Grelet, Anna Petri, Martin Hartmann, Bengtsson, Johan, Bengtsson-Palme, Johan,, Eriksson, Karl Martin,, K. Martin Eriksson, Magnus Alm Rosenblad, R. Henrik Nilsson, Eriksson, Martin,, Petri, Anna, Bengtsson, Johan,, Hartmann, Martin,, Grelet, Gwen-A\ueblle   +31 more
core   +1 more source

L11 domain rearrangement upon binding to RNA and thiostrepton studied by NMR spectroscopy [PDF]

, 2006
Ribosomal proteins are assumed to stabilize specific RNA structures and promote compact folding of the large rRNA. The conformational dynamics of the protein between the bound and unbound state play an important role in the binding process.
Wöhnert, Jens, Hendrik R. A. Jonker, Harald Schwalbe, Ilin, Serge, S. Kaspar Grimm, Grimm, Steffen Kaspar, Jens Wöhnert, Jonker, Hendrik R. A., Schwalbe, Harald (Prof. Dr.), Serge Ilin   +9 more
core   +2 more sources

Isolation and Phylogenetic Analysis of Thermophile Community Within Tanjung Sakti Hot Spring, South Sumatera, Indonesia

Hayati Journal of Biosciences, 2015
A community of thermophiles within Tanjung Sakti Hot Spring (South Sumatera) have been cultivated and identified based on 16S ribosomal RNA gene sequence. The hot spring has temperature 80 °C–91 °C and pH 7–8.
Heni Yohandini, Julinar, Muharni
doaj   +1 more source

Analysis of endometrial microbiota by 16S ribosomal RNA gene sequencing among infertile patients: a single‐center pilot study

Reproductive Medicine and Biology, 2018
The present study aimed to analyze the endometrial and vaginal microbiome among a Japanese infertile population by sequencing and the impact of the endometrial and vaginal environment on implantation.
K. Kyono, T. Hashimoto, Y. Nagai, Y. Sakuraba   +3 more
semanticscholar   +1 more source

A comprehensive comparison of comparative RNA structure prediction approaches [PDF]

, 2004
Gardner PP, Giegerich R. A comprehensive comparison of comparative RNA structure prediction approaches. BMC Bioinformatics. 2004;5(1): 140.Background: An increasing number of researchers have released novel RNA structure analysis and prediction ...
Giegerich, R., Gardner, Paul P., Gardner, P. P., Paul P Gardner, Robert Giegerich, Giegerich, Robert, Giegerich Robert, Gardner Paul P   +7 more
core   +1 more source

Taxonomic and Characterization Methods of Streptomyces: A Review

Progress in Microbes and Molecular Biology, 2018
The 16S ribosomal RNA gene is the gold standard for taxonomic identification and phylogenetic study of most of the bacteria. However, the resolution of 16S rRNA gene is found to be insufficient to distinguish closely related Streptomyces species within ...
Jodi Woan-Fei Law, Kei-Xian Tan, Sunny Hei Wong, Nurul-Syakima Ab Mutalib, Learn-Han Lee   +4 more
doaj   +1 more source

Using Mothur to Determine Bacterial Community Composition and Structure in 16S Ribosomal RNA Datasets

Current Protocols in Bioinformatics, 2019
The 16S ribosomal RNA (rRNA) gene is one of the scaffolding molecules of the prokaryotic ribosome. Because this gene is slow to evolve and has very well conserved regions, this gene is used to reconstruct phylogenies in prokaryotes. Universal primers can
Sruthi Chappidi, Erika C. Villa, B. Cantarel   +2 more
semanticscholar   +1 more source