Results 61 to 70 of about 323,905 (300)

Prevalence of 16S rRNA methylase genes among β-lactamase-producing Enterobacteriaceae clinical isolates in Saudi Arabia [PDF]

Libyan Journal of Medicine, 2014
Background: Co production of 16S rRNA methylases gene and β-Lactamase gene among Enterobacteriaceae isolates conferring resistance to both therapeutic options has serious implications for clinicians worldwide.
Yazeed A. Al Sheikh, Mohammed Ali M. Marie, James John, Lakshmana Gowda Krishnappa, Khaled Homoud M. Dabwab   +4 more
doaj   +1 more source

Microvariation Artifacts Introduced by PCR and Cloning of Closely Related 16S rRNA Gene Sequences [PDF]

, 2001
A defined template mixture of seven closely related 16S-rDNA clones was used in a PCR-cloning experiment to assess and track sources of artifactual sequence variation in 16S rDNA clone libraries. At least 14% of the recovered clones contained aberrations.
Speksnijder, A.G.C.L., Kowalchuk, G.A., Jong, S., de, Kline, E., Stephen, J.R., Laanbroek, H.J.   +5 more
core   +3 more sources

Mesorhizobium septentrionale sp nov and Mesorhizobium temperatum sp nov., isolated from Astragalus adsurgens growing in the northern regions of China [PDF]

, 2004
Ninety-five rhizobial strains isolated from Astragalus adsurgens growing in the northern regions of China were classified into three main groups, candidate species 1, 11 and 111, based on a polyphasic approach.
Allen, Chen, Chen, Chen, Chen, de Lajudie, de Lajudie, De Ley, En Tao Wang, Feng Ling Kan, Gao, Gao, Gaunt, Graham, Guo, Hurek, J. Peter W. Young, Jarvis, Jun Gu, Jun-Lian Gao, Kristina Lindström, Laguerre, Li, Marmur, Marmur, Martínez-Romero, Nagasawa, Page, Peng, Sarah Lea Turner, Shon, Sneath, Sriprang, Sullivan, Tan, Thompson, Turner, Velázquez, Vincent, Wang, Wang, Wayne, Wdowiak, Wen Xin Chen, Xu, Yu Hui Qiu, Zewdu Terefework, Zhang, Zhi Yuan Tan   +48 more
core   +1 more source

Identification of Comamonas species using 16S rRNA gene sequence [PDF]

Bioinformation, 2009
A bacterial strain Bz02 was isolated from a water sample collected from river Gomti at the Indian city of Lucknow. We characterized the strain using 16S rRNA sequence. Phylogenetic analysis showed that the strain formed a monophyletic clade with members of the genus Comamonas.
Vimlesh, Yadav, Satya, Prakash, Shipra, Srivastava, Praveen Chandra, Verma, Vijayta, Gupta, Vaishali, Basu, Anil Kumar, Rawat   +6 more
openaire   +2 more sources

Individual-specific changes in the human gut microbiota after challenge with enterotoxigenic Escherichia coli and subsequent ciprofloxacin treatment [PDF]

, 2016
Acknowledgements The authors wish to thank Mark Stares, Richard Rance, and other members of the Wellcome Trust Sanger Institute’s 454 sequencing team for generating the 16S rRNA gene data. Lili Fox Vélez provided editorial support.
Astrovskaya, Irina, Chakraborty, Subhra, Corrada Bravo, Héctor, Harro, Clayton, Li, Shan, Lindsay, Brianna R., Parkhill, Julian, Paulson, Joseph N., Pop, Mihai, Sack, David A., Stine, O. Colin, Walker, Alan W., Walker, Richard I.   +12 more
core   +2 more sources

Comparison of 16S rRNA gene sequences of genus Methanobrevibacter [PDF]

BMC Microbiology, 2004
The phylogeny of the genus Methanobrevibacter was established almost 25 years ago on the basis of the similarities of the 16S rRNA oligonucleotide catalogs. Since then, many 16S rRNA gene sequences of newly isolated strains or clones representing the genus Methanobrevibacter have been deposited.
Patole Milind S, Pidiyar Vyankatesh J, González José M, Jangid Kamlesh, Dighe Abhijit S, Ranade Dilip R, Shouche Yogesh S   +6 more
openaire   +3 more sources

Small and mighty: adaptation of superphylum Patescibacteria to groundwater environment drives their genome simplicity. [PDF]

, 2020
BackgroundThe newly defined superphylum Patescibacteria such as Parcubacteria (OD1) and Microgenomates (OP11) has been found to be prevalent in groundwater, sediment, lake, and other aquifer environments.
Adams, Benjamin G, Alm, Eric J, Arkin, Adam P, Detienne, Brittny L, Fields, Matthew W, Gao, Shuhong, Hazen, Terry C, He, Zhili, Joyner, Dominique C, Klingeman, Dawn M, Lowe, Kenneth A, Ning, Daliang, Rocha, Andrea M, Shi, Weiling, Spencer, Sarah J, Stahl, David A, Tian, Renmao, Wu, Linwei, Yang, Yunfeng, Zhang, Ping, Zhang, Ya, Zhou, Jizhong   +21 more
core   +2 more sources

Protein pyrophosphorylation by inositol pyrophosphates — detection, function, and regulation

FEBS Letters, EarlyView.
Protein pyrophosphorylation is an unusual signaling mechanism that was discovered two decades ago. It can be driven by inositol pyrophosphate messengers and influences various cellular processes. Herein, we summarize the research progress and challenges of this field, covering pathways found to be regulated by this posttranslational modification as ...
Sarah Lampe, Tanmay Kumar Mohanty, Rashna Bhandari, Dorothea Fiedler   +3 more
wiley   +1 more source

Quantifying dominant bacterial genera detected in metagenomic data from fish eggs and larvae using genus‐specific primers

MicrobiologyOpen, 2022
The goal of this study was to design genus‐specific primers for rapid evaluation of the most abundant bacterial genera identified using amplicon‐based sequencing of the 16S rRNA gene in fish‐related samples and surrounding water. Efficient genus‐specific
Babak Najafpour, Patricia I. S. Pinto, A. V. M. Canario, Deborah M. Power   +3 more
doaj   +1 more source

The Human Oral Microbiome Database: a web accessible resource for investigating oral microbe taxonomic and genomic information [PDF]

, 2010
The human oral microbiome is the most studied human microflora, but 53% of the species have not yet been validly named and 35% remain uncultivated. The uncultivated taxa are known primarily from 16S rRNA sequence information.
Baranova, Oxana V., Chen, Tsute, Dewhirst, Floyd E., Izard, Jacques, Lakshmanan, Abirami, Yu, Wen-Han   +5 more
core   +1 more source