Full-length 16S rRNA gene amplicon analysis using nanopore sequencing
, 2023 Nanopore sequencing reads of 16S rRNA gene amplicons from the 10-species mock bacterial community (ATCC MSA-1000).
Yoshiyuki Matsuo (12493648)
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Application of 16S rRNA gene sequencing in Helicobacter pylori detection [PDF]
PeerJ, 2020 Helicobacter pylori is one of the major stomach microbiome components, promoting development of inflammation and gastric cancer in humans. H. pylori has a unique ability to transform into a coccoidal form which is difficult to detect by many diagnostic ...
Aleksander Szymczak +6 more
doaj +2 more sources
PLoS ONE, 2019 Variable region analysis of 16S rRNA gene sequences is the most common tool in bacterial taxonomic studies. Although used for distinguishing bacterial species, its use remains limited due to the presence of variable copy numbers with sequence variation ...
Jerald Conrad Ibal +3 more
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Isolates 16S rRNA gene sequence
, 2021 16S rRNA gene sequence of isolates from wastewater treated with constructed wetlands obtained with Sanger ...
Camila A. Knecht (11587978)
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De novo species identification using 16S rRNA gene nanopore sequencing [PDF]
PeerJ, 2020 Nanopore sequencing is rapidly becoming more popular for use in various microbiota-based applications. Major limitations of current approaches are that they do not enable de novo species identification and that they cannot be used to verify species ...
Inga Leena Angell +14 more
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Gut microbiota-16S rRNA gene sequencing data
, 2022 To explore whether liraglutide could improve dyslipidemia by modulating the gut microbiota, the C57BL/6 mice were fed ahigh-fat diet to establish an animal model of dyslipidemia, and then administered with liraglutide or normal saline. After intervention
Li Zhao (14300624)
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Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine [PDF]
, 2009 BACKGROUND: Variations in the composition of the human intestinal microbiota are linked to diverse health conditions. High-throughput molecular technologies have recently elucidated microbial community structure at much higher resolution than was ...
Vos, W.M., de +46 more
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Sequencing 16S rRNA gene fragments using the PacBio SMRT DNA sequencing system [PDF]
PeerJ, 2016 Over the past 10 years, microbial ecologists have largely abandoned sequencing 16S rRNA genes by the Sanger sequencing method and have instead adopted highly parallelized sequencing platforms.
Patrick D. Schloss +4 more
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metaSPARSim: a 16S rRNA gene sequencing count data simulator
BMC Bioinformatics, 2019 Background In the last few years, 16S rRNA gene sequencing (16S rDNA-seq) has seen a surprisingly rapid increase in election rate as a methodology to perform microbial community studies.
Ilaria Patuzzi +4 more
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Accurate Identification of Common Pathogenic Nocardia Species: Evaluation of a Multilocus Sequence Analysis Platform and Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry. [PDF]
PLoS ONE, 2016 Species identification of Nocardia is not straightforward due to rapidly evolving taxonomy, insufficient discriminatory power of conventional phenotypic methods and also of single gene locus analysis including 16S rRNA gene sequencing.
Meng Xiao +10 more
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