Results 1 to 10 of about 443 (124)

RNA sequencing data of tobacco inoculated with Apple stem pitting virus [PDF]

Data in Brief, 2020
Apple stem pitting virus (ASPV) mainly infects apple, pear and their closely related species in the world. ASPV causes some symptoms like leaf etiolation and stony pit in cultivated pear, but produces few symptoms in cultivated apple.
Gengxuan Yan, Hongyi Yang
doaj   +2 more sources

Loquat (Eriobotrya japonica) Is a New Natural Host of Apple Stem Pitting Virus [PDF]

Plants, 2020
Loquat (Eriobotrya japonica) is a minor but important woody crop cultivated in Asia and Europe. High-throughput sequencing (HTS) analysis of an asymptomatic loquat plant using RNAseq Illumina technology has allowed the detection for the first time of ...
Félix Morán, Celia Canales, Antonio Olmos, Ana Belén Ruiz-García   +3 more
doaj   +2 more sources

Molecular Characterization of the Coat Protein Gene of Greek Apple Stem Pitting Virus Isolates: Evolution through Deletions, Insertions, and Recombination Events [PDF]

Plants, 2021
A RT–PCR assay developed to amplify the full coat protein (CP) gene of apple stem pitting virus (ASPV) was evaluated using 180 Greek apple and pear samples and showed a broad detection range.
Matthaios M. Mathioudakis, Varvara I. Maliogka, Thierry Candresse, Osmar Nickel, Thor Vinicius Martins Fajardo, Daria Budzyńska, Beata Hasiów-Jaroszewska, Nikolaos I. Katis   +7 more
doaj   +2 more sources

Genetic Diversity of a Natural Population of Apple stem pitting virus Isolated from Apple in Korea [PDF]

The Plant Pathology Journal, 2014
Apple stem pitting virus (ASPV), of the Foveavirus genus in the family Betaflexiviridae, is one of the most common viruses of apple and pear trees. To examine variability of the coat protein (CP) gene from ASPV, eight isolates originating from 251 apple ...
Ju Yeon Yoon, Jae Ho Joa, Kyung San Choi, Ki Seck Do, Han Cheol Lim, Bong Nam Chung   +5 more
doaj   +2 more sources

Functional analysis of apple stem pitting virus coat protein variants [PDF]

Virology Journal, 2019
Background Although the canonical function of viral coat protein (CP) is to encapsidate the viral genome, they have come to be recognized as multifunctional proteins, involved in almost every stage of the viral infection cycle.
Xiaofang Ma, Ni Hong, Peter Moffett, Yijun Zhou, Guoping Wang   +4 more
doaj   +2 more sources

Haplotype-phased 'Ottawa 3' genome unravels differential reaction of apple rootstock roots to mixed viral infection. [PDF]

Plant J
SUMMARY Viral diseases pose a significant threat to global apple (Malus spp.) production. While selecting appropriate rootstocks is a crucial strategy to mitigate their effects, the underlying mechanisms governing rootstock tolerance or sensitivity to viral infection at the root level remain underexplored.
Costa LC, Gottschalk C, Upchurch DM, Hurtado-Gonzales OP, Mansfeld BN, Yocca A, Whitt L, Vann C, Fazio G.   +8 more
europepmc   +2 more sources

Comprehensive Virome Profiling of Apple Mosaic Disease-Affected Trees in Iran Using RT-PCR and Next-Generation Sequencing [PDF]

Viruses
Apples (Malus domestica), one of Iran’s oldest cultivated fruit crops, hold considerable economic importance. In this study, 170 apple leaf samples representing various commercial cultivars were collected across the country.
Anahita Hamedi, Farshad Rakhshandehroo, Mohammad Reza Safarnejad, Gholamreza Salehi Jouzani, Amani Ben Slimen, Toufic Elbeaino   +5 more
doaj   +2 more sources

Viruses of Apple Are Seedborne but Likely Not Vertically Transmitted [PDF]

Viruses
Many viruses occur in apple (Malus domestica (Borkh.)), but no information is available on their seed transmissibility. Here, we report that six viruses infecting apple trees, namely, apple chlorotic leaf spot virus (ACLSV), apple green crinkle ...
Anna Wunsch, Bailey Hoff, Mario Miranda Sazo, Janet van Zoeren, Kurt H. Lamour, Oscar P. Hurtado-Gonzales, Marc Fuchs   +6 more
doaj   +2 more sources

Assessing the de novo assemblers: a metaviromic study of apple and first report of citrus concave gum-associated virus, apple rubbery wood virus 1 and 2 infecting apple in India [PDF]

BMC Genomics
Background The choice of de novo assembler for high-throughput sequencing (HTS) data remains a pivotal factor in the HTS-based discovery of viral pathogens.
Zainul A. Khan, Susheel Kumar Sharma, Nitika Gupta, Damini Diksha, Pooja Thapa, Mailem Yazing Shimray, Malyaj R. Prajapati, Sajad U. Nabi, Santosh Watpade, Mahendra K. Verma, Virendra K. Baranwal   +10 more
doaj   +2 more sources

A comparative template-switching cDNA approach for HTS-based multiplex detection of three viruses and one viroid commonly found in apple trees [PDF]

Scientific Reports
Exclusion is a keystone of integrated pest management to prevent the introduction of pathogens. U.S. plant quarantine programs employ PCR and high-throughput sequencing (HTS) to test imported plants for viruses and viroids of concern.
Francisco Mosquera-Yuqui, Daniel Ramos-Lopez, Xiaojun Hu, Yu Yang, Joshua L. Mendoza, Emmanuel Asare, Joshua Habiger, Oscar P. Hurtado-Gonzales, Andres S. Espindola   +8 more
doaj   +2 more sources