Results 261 to 270 of about 176,761 (289)

Laser-Capture Microdissection Followed by ATAC-Seq

Laser-capture microdissection (LCM) enables the collection of regions of interest from target tissues, making it compatible with a number of spatially resolved downstream omics applications. Here, we provide a detailed protocol for LCM coupled to ATAC-seq (LCM-ATAC-seq) for the spatial analysis of chromatin landscape based on the method published by ...
Hartmann, Celia L, Schultze, Joachim L, Beyer, Marc D, Carraro, Caterina   +3 more
openaire   +3 more sources

atac-seq of down syndrome-derived aminocytes

2023
We performed Assay for transposase-accessible chromatin with high-throughout sequencing (ATAC-Seq) to explore the difference of chromatin accessibility in DS derived aminocytes (DSACs) versus Normal.
openaire   +1 more source

ATAC-seq of human cell line, commercial

2023
HK-2 cells were treated with hyposia, and then were sequenced by ATAC-seq.
openaire   +1 more source

Omni-ATAC-seq: Improved ATAC-seq protocol

Protocol Exchange, 2017
M. Ryan Corces, M. Ryan Corces, Alexandro E. Trevino, Emily G. Hamilton, Peyton G. Greenside, Nicholas A Sinnott-Armstrong, Sam Vesuna, Ansuman T. Satpathy, Adam J. Rubin, Kathleen S. Montine, Beijing Wu, Arwa Kathiria, Seung Woo Cho, Maxwell R. Mumbach, Ava C. Carter, Maya Kasowski, Lisa A. Orloff, Viviana I. Risca, Anshul Kundaje, Paul A. Khavari, Thomas J. Montine, William J. Greenleaf, Howard Y. Chang   +22 more
openaire   +1 more source

[ATAC-seq and its applications in complex disease].

Yi chuan = Hereditas, 2020
ATAC-seq is a high-throughput technology that defines and quantifies chromatin accessibility by analyzing Tn5 transposase enzymes. ATAC-seq is used to map chromatin accessibility genome-wide and to identify regions of transcription-factor binding and nucleosome position.
Min, Chen, Zheng, Zhang, Zi Yuan, Meng, Xue Jun, Zhang   +3 more
openaire   +1 more source

ATAC-seq and psychiatric disorders

2021
John F. Fullard, Jaroslav Bendl, Panos Roussos   +2 more
openaire   +1 more source

Capturing Chromatin Organization by MNase-seq and ATAC-seq

Hox genes play a pivotal role during development. Their expression is tightly controlled in a spatiotemporal manner, ensuring that specific body structures develop at the correct locations and times during development. Various genomics approaches have been used to capture temporal and dynamic regulation of Hox gene expression at the nucleosome ...
Mika, Saotome, Jill, Goodman, Motoki, Takaku   +2 more
openaire   +2 more sources

Bibliometric review of ATAC-Seq and its application in gene expression.

Briefings in Bioinformatics, 2022
Michael Gribskov, Sufang Wang
exaly  

AIAP: A Quality Control and Integrative Analysis Package to Improve ATAC-seq Data Analysis

Genomics, Proteomics and Bioinformatics, 2021
Paul Gontarz, Daofeng Li, Pamela A F Madden   +2 more
exaly  

CoBRA: Containerized Bioinformatics Workflow for Reproducible ChIP/ATAC-seq Analysis

Genomics, Proteomics and Bioinformatics, 2021
Henry W Long, Len Taing, Rinath Jeselsohn   +2 more
exaly