Results 41 to 50 of about 176,761 (289)
BMC Genomics, 2018 Background Chromatin accessibility profiling assays such as ATAC-seq and DNase1-seq offer the opportunity to rapidly characterize the regulatory state of the genome at a single nucleotide resolution.
Thomas J. F. Pranzatelli +2 more
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Optimization of ATAC-seq in wheat seedling roots using INTACT-isolated nuclei
BMC Plant Biology, 2023 Background The genetic information contained in the genome of an organism is organized in genes and regulatory elements that control gene expression.
Juan M. Debernardi +5 more
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ATAC-seq peak genomic distribution.
, 2022 A. Bar plot showing the genomic distribution of accessible peaks identified in ATAC-seq data in Rh1>GFPKASH during aging. Promoter annotation was based on -/+ 2 kb around transcription start sites. B. DNA binding motif for Clk and Cyc derived from CIS-BP
Vikki M. Weake (9268870) +5 more
core +1 more source
, 2023 Through the assay for transposase-accessible chromatin sequencing (ATAC-seq) and RNA-seq analysis, we identified the regulatory network underlying leaf senescence.
Wang (17453556)
core +1 more source
ATAC-Seq of a Single Myofiber from Mus musculus
BIO-PROTOCOL, 2022 Chromatin accessibility is a key determinant of gene expression that can be altered under different physiological and disease conditions. Skeletal muscle is made up of myofibers that are highly plastic and adaptive. Therefore, assessing the genome-wide chromatin state of myofibers under various conditions is very important to gain insight into the ...
Korin Sahinyan +2 more
openaire +3 more sources
simATAC: a single-cell ATAC-seq simulation framework [PDF]
Genome Biology, 2020 Abstract Single-cell assay for transposase-accessible chromatin sequencing (scATAC-seq) identifies regulated chromatin accessibility modules at the single-cell resolution. Robust evaluation is critical to the development of scATAC-seq pipelines, which calls for reproducible datasets for benchmarking.
Navidi, Zeinab, Zhang, Lin, Wang, Bo
openaire +4 more sources
Bibliometric Analysis of ATAC-Seq and Its Use in Cancer Biology via Nucleic Acid Detection
Frontiers in Medicine, 2020 Assay for transposase-accessible chromatin using sequencing (ATAC-seq) is associated with significant progress in biological research and has attracted increasing attention.
Yu Zhao +9 more
doaj +1 more source
ATAC-seq samples used in model training and evaluation.
, 2021 ATAC-seq samples used in model training and evaluation.
Asa Thibodeau (3164796) +5 more
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STAR Protocols, 2021 Summary: We present a simple, fast, and robust protocol (low-input ATAC&mRNA-seq) to simultaneously generate ATAC-seq and mRNA-seq libraries from the same cells in limited cell numbers by coupling a simplified ATAC procedure using whole cells with a ...
Ruifang Li, Sara A. Grimm, Paul A. Wade
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ATAC-seq library metrics for adipose tissue libraries.
, 2021 Adipose tissue ATAC-seq library metrics with batch, sequencing and alignment metrics. (XLSX)
Kenneth K. Ng (1294980) +8 more
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