Results 11 to 20 of about 2,351 (208)

Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO). [PDF]

PLoS Comput Biol, 2021
Experimental data about gene functions curated from the primary literature have enormous value for research scientists in understanding biology. Using the Gene Ontology (GO), manual curation by experts has provided an important resource for studying gene
Ramsey J, McIntosh B, Renfro D, Aleksander SA, LaBonte S, Ross C, Zweifel AE, Liles N, Farrar S, Gill JJ, Erill I, Ades S, Berardini TZ, Bennett JA, Brady S, Britton R, Carbon S, Caruso SM, Clements D, Dalia R, Defelice M, Doyle EL, Friedberg I, Gurney SMR, Hughes L, Johnson A, Kowalski JM, Li D, Lovering RC, Mans TL, McCarthy F, Moore SD, Murphy R, Paustian TD, Perdue S, Peterson CN, Prüß BM, Saha MS, Sheehy RR, Tansey JT, Temple L, Thorman AW, Trevino S, Vollmer AC, Walbot V, Willey J, Siegele DA, Hu JC.   +47 more
europepmc   +5 more sources

The future of biocuration [PDF]

Nature, 2008
To thrive, the field that links biologists and their data urgently needs structure, recognition and support.
Takashi Gojobori, Seung Y. Rhee, Linda Hannick, Renate Kania, Doug Howe, Maria C. Costanzo, Mary L. Schaeffer, Mary L. Schaeffer, Simon N. Twigger, Owen White, Petra Fey, Winston Hide, Winston Hide, Susan E. St. Pierre, David P. Hill   +14 more
openaire   +5 more sources

Biocuration Workflow Catalogue [PDF]

Nature Precedings, 2009
AbstractAs the first phase of a knowledge engineering study of biocuration workflows, we performed a preliminary task-modeling exercise on seven separate bioinformatics systems. This involved constructing UML activity diagrams from detailed interviews with curators in order to understand the organization of the process the biocurators used to populate ...
Gully Burns, Martin Krallinger, Kevin Cohen, Cathy Wu, Lynette Hirschman   +4 more
  +6 more sources

Automatic categorization of diverse experimental information in the bioscience literature [PDF]

BMC Bioinformatics, 2012
Background: Curation of information from bioscience literature into biological knowledge databases is a crucial way of capturing experimental information in a computable form. During the biocuration process, a critical first step is to identify from all
Brown, Nick, Chen, Wen, Davis, Paul, Fang, Ruihua, Fernandes, Jolene, Gelbart, William M., Marygold, Steven J., Matthews, Beverley, Millburn, Gillian, Schindelman, Gary, Sternberg, Paul W., Tuli, Mary Ann, Van Auken, Kimberly, Wang, Xiaodong, Zhang, Haiyan   +14 more
core   +6 more sources

Bringing Biocuration to China

Genomics, Proteomics & Bioinformatics, 2014
Abstract Biocuration involves adding value to biomedical data by the processes of standardization, quality control and information transferring (also known as data annotation). It enhances data interoperability and consistency, and is critical in translating biomedical data into scientific discovery.
Zhang Zhang, Jingchu Luo, Weimin Zhu
openaire   +4 more sources

Biocuration: Distilling data into knowledge [PDF]

PLOS Biology, 2018
Data, including information generated from them by processing and analysis, are an asset with measurable value. The assets that biological research funding produces are the data generated, the information derived from these data, and, ultimately, the discoveries and knowledge these lead to.
International Society for Biocuration
openaire   +6 more sources

Biocuration in the structure–function linkage database: the anatomy of a superfamily [PDF]

Database, 2017
With ever-increasing amounts of sequence data available in both the primary literature and sequence repositories, there is a bottleneck in annotating molecular function to a sequence. This article describes the biocuration process and methods used in the structure-function linkage database (SFLD) to help address some of the challenges.
Patricia C. Babbitt, Patricia C. Babbitt, Conrad C. Huang, Michael A. Hicks, Gemma L. Holliday, Scott C.-H. Pegg, John H. Morris, Eyal Akiva, David Mischel, Shoshana D. Brown, Thomas E. Ferrin, Thomas E. Ferrin, Elaine C. Meng   +12 more
  +12 more sources

A Framework for BioCuration Workflows (part II) [PDF]

Nature Precedings, 2009
AbstractThis is the second part of the talk ‘A Framework for BioCuration Workflows’, given by Martin Krallinger from the Spanish National Cancer Research Centre at the 'Text Mining for the BioCuration Workflow' workshop. The first part was held by Gully APC Burns (USC Information Sciences Institute, USA).
Martin Krallinger, Martin Krallinger
  +6 more sources

Studying Biocuration Workflows [PDF]

Nature Precedings, 2009
AbstractAs the first phase of a knowledge engineering study of biocuration workflows, we performed a preliminary task-modeling exercise on seven separate bioinformatics systems. This involved constructing UML activity diagrams from detailed interviews with curators in order to understand the organization of the process the biocurators used to populate ...
Gully A. P. C. Burns, Martin Krallinger, Kevin Cohen, Cathy Wu, Lynette Hirschman   +4 more
  +6 more sources

Text mining in the biocuration workflow: applications for literature curation at WormBase, dictyBase and TAIR [PDF]

, 2012
WormBase, dictyBase and The Arabidopsis Information Resource (TAIR) are model organism databases containing information about Caenorhabditis elegans and other nematodes, the social amoeba Dictyostelium discoideum and related Dictyostelids and the ...
Basu, Siddhartha, Berardini, Tanya Z., Chan, Juancarlos, Chisholm, Rex, Cooper, Laurel, Dodson, Robert, Fey, Petra, Huala, Eva, Li, Donghui, Li, Yuling, Muller, Hans-Michael, Sternberg, Paul W., Van Auken, Kimberly   +12 more
core   +3 more sources