Results 61 to 70 of about 2,351 (208)

Integrative biological simulation praxis: Considerations from physics, philosophy, and data/model curation practices [PDF]

, 2017
Integrative biological simulations have a varied and controversial history in the biological sciences. From computational models of organelles, cells, and simple organisms, to physiological models of tissues, organ systems, and ecosystems, a diverse ...
Faundez, Victor, Sarma, Gopal P.
core   +2 more sources

Data libraries – the missing element for modeling biological systems

The FEBS Journal, Volume 287, Issue 21, Page 4594-4601, November 2020., 2020
Data integration critically depends on data being available in an organized form, so that they can be accessed, understood, and reused. A proven solution for organizing data is literature curation, which is instrumental for integrating findings across publications.
Anastasia Baryshnikova
wiley   +1 more source

The SIB Swiss Institute of Bioinformatics’ resources : focus on curated databases [PDF]

, 2015
The SIB Swiss Institute of Bioinformatics provides world-class bioinformatics databases, software tools, services and training to the international life science community in academia and industry.
Anisimova, Maria, Gatti, Lorenzo, Gil, Manuel, Maiolo, Massimo   +3 more
core   +4 more sources

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task [PDF]

, 2013
In many databases, biocuration primarily involves literature curation, which usually involves retrieving relevant articles, extracting information that will translate into annotations and identifying new incoming literature.
Arighi, Cecilia N., Chan, Juancarlos, Li, Yuling, Muller, Hans-Michael, Van Auken, Kimberly   +4 more
core   +1 more source

A behind‐the‐scenes tour of the IEDB curation process: an optimized process empirically integrating automation and human curation efforts

Immunology, Volume 161, Issue 2, Page 139-147, October 2020., 2020
The Immune Epitope Database and Analysis Resource (IEDB) provides the scientific community with open access to epitope data, as well as epitope prediction and analysis tools. Herein, we provide insights into an objective analysis of our data identification, categorization, curation and quality‐checking processes.
Nima Salimi, Lindy Edwards, Gabriele Foos, Jason A. Greenbaum, Sheridan Martini, Brian Reardon, Deborah Shackelford, Randi Vita, Leora Zalman, Bjoern Peters, Alessandro Sette   +10 more
wiley   +1 more source

Current status of the multinational Arabidopsis community

Plant Direct, Volume 4, Issue 7, July 2020., 2020
Abstract The multinational Arabidopsis research community is highly collaborative and over the past thirty years these activities have been documented by the Multinational Arabidopsis Steering Committee (MASC). Here, we (a) highlight recent research advances made with the reference plant Arabidopsis thaliana; (b) provide summaries from recent reports ...
Geraint Parry, Nicholas J. Provart, Siobhan M. Brady, Baris Uzilday, The Multinational Arabidopsis Steering Committee, Keith Adams, Wagner Araújo, Sébastien Aubourg, Sacha Baginsky, Erica Bakker, Katja Bärenfaller, Jacqui Batley, Mike Beale, Mark Beilstein, Youssef Belkhadir, Gregor Mendel, Tanya Berardini, Joy Bergelson, Francisca Blanco‐Herrera, Siobhan Brady, Hans‐Peter Braun, Steve Briggs, Lynette Brownfield, Maura Cardarelli, Marcos Castellanos‐Uribe, Gloria Coruzzi, Maheshi Dassanayake, Geert De Jaeger, Brian Dilkes, Colleen Doherty, Joe Ecker, Pat Edger, David Edwards, Farid El Kasmi, Maria Eriksson, Moises Exposito‐Alonso, Pascal Falter‐Braun, Alisdair Fernie, Myriam Ferro, Oliver Fiehn, Joanna Friesner, Katie Greenham, Yalong Guo, Thorsten Hamann, Angela Hancock, Marie‐Theres Hauser, Joshua Heazlewood, Cheng‐Hsun Ho, Hanna Hõrak, Eva Huala, Inhwan Hwang, Satoshi Iuchi, Pankaj Jaiswal, Liina Jakobson, Yunhe Jiang, Yuling Jiao, Alexandra Jones, Yasuhiro Kadota, Jitendra Khurana, Dan Kliebenstein, Emma Knee, Masatomo Kobayashi, Marcus Koch, Gabriel Krouk, Tony Larson, Rob Last, Loïc Lepiniec, Song Li, Claire Lurin, Martin Lysak, Steven Maere, Robert Malinowski, Florian Maumus, Sean May, Klaus Mayer, David Mendoza‐Cozatl, Isabel Mendoza‐Poudereux, José Luis Micol, Harvey Millar, Hans‐Peter Mock, Karolina Mukhtar, Shahid Mukhtar, Monika Murcha, Hirofumi Nakagami, Yasukazu Nakamura, Luke Nicolov, Basil Nikolau, Moritz Nowack, Adriano Nunes‐Nesi, Michael Palmgren, Geraint Parry, Nicola Patron, Scott Peck, Ullas Pedmale, Catherine Perrot‐Rechenmann, Roland Pieruschka, José Pío‐Beltrán, J. Chris Pires, Nicholas Provart, Loïc Rajjou, Leonore Reiser, Sue Rhee, Stamatis Rigas, Norbert Rolland, Andres Romanowski, Sigal Savaldi‐Goldstein, Robert Schmitz, Waltraud Schulze, Motoaki Seki, Kentaro K. Shimizu, Keith Slotkin, Ian Small, David Somers, Rosangela Sozzani, Charles Spillane, Ramamurthy Srinivasan, Nicolas Taylor, Marcela‐Karey Tello‐Ruiz, Jay Thelen, Takayuki Tohge, Christopher Town, Tetsuro Toyoda, Baris Uzilday, Justin Walley, Doreen Ware, Wolfram Weckwerth, Julian Whitelegge, Stefanie Wienkoop, Clay Wright, Michael Wrzaczek, Misako Yamazaki, Marcelo Yanovsky, Viktor Žárský, Xuehua Zhong, Yves Van De Peer, Klaas Van Wijk, Philipp Von Gillhaussen   +136 more
wiley   +1 more source

BI-LAVA: Biocuration with Hierarchical Image Labeling through Active Learning and Visual Analysis [PDF]

arXiv, 2023
In the biomedical domain, taxonomies organize the acquisition modalities of scientific images in hierarchical structures. Such taxonomies leverage large sets of correct image labels and provide essential information about the importance of a scientific publication, which could then be used in biocuration tasks.
arxiv  

Logical Operation Based Literature Association with Genes and its application, PosMed. [PDF]

, 2010
PosMed prioritizes candidate genes for positional cloning by employing our original database search engine GRASE, which uses an inferential process similar to an artificial neural network comprising documental neurons (or 'documentrons') that ...
Akihiro Matsushima, Manabu Ishii, Mrinalini Deshpande, Norio Kobayashi, Rinki Bhatia, Testuro Toyoda, Yoshiki Mochizuki, Yuko Makita, Yuko Makita, Yuko Yoshida   +9 more
core   +2 more sources

Detection of Antimicrobial Resistance Using Proteomics and the Comprehensive Antibiotic Resistance Database: A Case Study

PROTEOMICS – Clinical Applications, Volume 14, Issue 4, July 2020., 2020
Purpose Antimicrobial resistance (AMR), especially multidrug resistance, is one of the most serious global threats facing public health. The authors proof‐of‐concept study assessing the suitability of shotgun proteomics as an additional approach to whole‐genome sequencing (WGS) for detecting AMR determinants.
Chih‐yu Chen, Clifford G. Clark, Stacie Langner, David A. Boyd, Amrita Bharat, Stuart J. McCorrister, Andrew G. McArthur, Morag R. Graham, Garrett R. Westmacott, Gary Van Domselaar   +9 more
wiley   +1 more source

Citizen Science for Mining the Biomedical Literature

Citizen Science: Theory and Practice, 2016
Biomedical literature represents one of the largest and fastest growing collections of unstructured biomedical knowledge. Finding critical information buried in the literature can be challenging. To extract information from free-flowing text, researchers
Ginger Tsueng, Steven M. Nanis, Jennifer Fouquier, Benjamin M. Good, Andrew I. Su   +4 more
doaj   +1 more source