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BMC Biology, 2021 Background Target of Rapamycin Complex 1 (TORC1) is a highly conserved eukaryotic protein complex that couples the presence of growth factors and nutrients in the environment with cellular proliferation.
Mohammad Alfatah +10 more
doaj +1 more source
Applications of transformer-based language models in bioinformatics: a survey
Bioinformatics Advances, 2023 Summary The transformer-based language models, including vanilla transformer, BERT and GPT-3, have achieved revolutionary breakthroughs in the field of natural language processing (NLP).
Shuang Zhang +5 more
semanticscholar +1 more source
VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center
Nucleic Acids Res., 2021 The Eukaryotic Pathogen, Vector and Host Informatics Resource (VEuPathDB, https://veupathdb.org) represents the 2019 merger of VectorBase with the EuPathDB projects.
Beatrice Amos +65 more
semanticscholar +1 more source
A Markov blanket-based method for detecting causal SNPs in GWAS
BMC Bioinformatics, 2010 Background Detecting epistatic interactions associated with complex and common diseases can help to improve prevention, diagnosis and treatment of these diseases.
Han Bing, Park Meeyoung, Chen Xue-wen
doaj +1 more source
Facilitating bioinformatics reproducibility with QIIME 2 Provenance Replay.
PLoS Computational Biology, 2023 Study reproducibility is essential to corroborate, build on, and learn from the results of scientific research but is notoriously challenging in bioinformatics, which often involves large data sets and complex analytic workflows involving many different ...
Christopher R Keefe +7 more
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Graph Neural Networks and Their Current Applications in Bioinformatics
Frontiers in Genetics, 2021 Graph neural networks (GNNs), as a branch of deep learning in non-Euclidean space, perform particularly well in various tasks that process graph structure data.
Xiao-Meng Zhang +3 more
semanticscholar +1 more source
MACBenAbim: A Multi-platform Mobile Application for searching keyterms in Computational Biology and Bioinformatics [PDF]
, 2012 Computational biology and bioinformatics are gradually gaining grounds in Africa and other developing nations of the world. However, in these countries, some of the challenges of computational biology and bioinformatics education are inadequate ...
Adewumi, A. O. +2 more
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Explainable AI for Bioinformatics: Methods, Tools, and Applications [PDF]
Briefings Bioinform., 2022 Artificial intelligence (AI) systems utilizing deep neural networks and machine learning (ML) algorithms are widely used for solving critical problems in bioinformatics, biomedical informatics and precision medicine.
Md. Rezaul Karim +6 more
semanticscholar +1 more source
Development of Integrative Bioinformatics Applications using Cloud Computing resources and Knowledge Organization Systems (KOS). [PDF]
, 2005 Use of semantic web abstractions, in particular of domain neural Knowledge Organization Systems (KOS), to manage distributed, cloud based, integrative bioinformatics infrastructure.
Jonas Almeida +3 more
core +2 more sources
Nucleic Acids Research, 2008 Functional analysis of large gene lists, derived in most cases from emerging high-throughput genomic, proteomic and bioinformatics scanning approaches, is still a challenging and daunting task.
Da Wei Huang +2 more
semanticscholar +1 more source