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Interpolative Boolean Networks [PDF]

open access: yesComplexity, 2017
Boolean networks are used for modeling and analysis of complex systems of interacting entities. Classical Boolean networks are binary and they are relevant for modeling systems with complex switch-like causal interactions.
Vladimir Dobrić   +4 more
doaj   +3 more sources

The basis of easy controllability in Boolean networks [PDF]

open access: yesNature Communications, 2021
Boolean networks allow a simplified representation of interactions. Here, the authors systematically analyze regulation in dozens of biological Boolean networks, finding mathematical regularities that suggest biological systems could be controlled ...
Enrico Borriello, Bryan C. Daniels
doaj   +2 more sources

Influence maximization in Boolean networks [PDF]

open access: yesNature Communications, 2022
Boolean networks modelling various biological processes are characterized by nonlinear reversible dynamics that makes their control challenging. The authors introduce extended concepts of influence and control, typically considered in the study of ...
Thomas Parmer   +2 more
doaj   +2 more sources

Random Boolean Networks

open access: yes, 2007
This review explains in a self-contained way the properties of random Boolean networks and their attractors, with a special focus on critical networks.
Drossel, Barbara
core   +3 more sources

The Dynamics of Canalizing Boolean Networks [PDF]

open access: yesComplexity, 2020
Boolean networks are a popular modeling framework in computational biology to capture the dynamics of molecular networks, such as gene regulatory networks.
Elijah Paul   +3 more
doaj   +2 more sources

Analytical approach of synchronous and asynchronous update schemes applied to solving biological Boolean networks. [PDF]

open access: yesPLoS ONE
Characterizing the minimum, necessary and sufficient components to generate the dynamics of a biological system has always been a priority to understand its functioning.
Antonio Bensussen   +3 more
doaj   +2 more sources

Boolean networks as modelling framework [PDF]

open access: yesFrontiers in Plant Science, 2012
In a network, the components of a given system are represented as nodes, the interactions are abstracted as links between the nodes. Boolean networks refer to a class of dynamics on networks, in fact it is the simplest possible dynamics where each node ...
Florian eGreil, Florian eGreil
doaj   +4 more sources

Boolean networks with reliable dynamics [PDF]

open access: yesPhysical Review E, 2009
We investigated the properties of Boolean networks that follow a given reliable trajectory in state space. A reliable trajectory is defined as a sequence of states which is independent of the order in which the nodes are updated.
B. Drossel   +6 more
core   +3 more sources

Boolean networks synchronism sensitivity and XOR circulant networks convergence time [PDF]

open access: yesElectronic Proceedings in Theoretical Computer Science, 2012
In this paper are presented first results of a theoretical study on the role of non-monotone interactions in Boolean automata networks. We propose to analyse the contribution of non-monotony to the diversity and complexity in their dynamical behaviours ...
Mathilde Noual   +2 more
doaj   +5 more sources

Evolution of Canalizing Boolean Networks [PDF]

open access: yesThe European Physical Journal B, 2007
Boolean networks with canalizing functions are used to model gene regulatory networks. In order to learn how such networks may behave under evolutionary forces, we simulate the evolution of a single Boolean network by means of an adaptive walk, which ...
A. Szejka   +19 more
core   +3 more sources

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