Results 21 to 30 of about 141,702 (274)
Asynchronous Simulation of Boolean Networks by Monotone Boolean Networks [PDF]
, 2016 To appear in the proceedings of ACA 2016 (fourth International Workshop on Asynchronous Cellular Automata and Asynchronous Discrete Models)
Melliti, Tarek +3 more
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Concurrency in Boolean networks [PDF]
Natural Computing, 2019 Boolean networks (BNs) are widely used to model the qualitative dynamics of biological systems. Besides the logical rules determining the evolution of each component with respect to the state of its regulators, the scheduling of component updates can have a dramatic impact on the predicted behaviours.
Chatain, Thomas +4 more
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On the effects of firing memory in the dynamics of conjunctive networks [PDF]
, 2019 Boolean networks are one of the most studied discrete models in the context of the study of gene expression. In order to define the dynamics associated to a Boolean network, there are several \emph{update schemes} that range from parallel or \emph ...
Goles, Eric +2 more
core +4 more sources
On Identification of Boolean Control Networks
SIAM Journal on Control and Optimization, 2022 A new analytical framework consisting of two phenomena: single sample and multiple samples, is proposed to deal with the identification problem of Boolean control networks (BCNs) systematically and comprehensively. Under this framework, the existing works on identification can be categorized as special cases of these two phenomena.
Biao Wang 0003 +2 more
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On the Periodic Structure of Parallel Dynamical Systems on Generalized Independent Boolean Functions
Mathematics, 2020 In this paper, based on previous results on AND-OR parallel dynamical systems over directed graphs, we give a more general pattern of local functions that also provides fixed point systems.
Juan A. Aledo +4 more
doaj +1 more source
Modular Random Boolean Networks [PDF]
Artificial Life, 2011 Random Boolean networks (RBNs) have been a popular model of genetic regulatory networks for more than four decades. However, most RBN studies have been made with random topologies, while real regulatory networks have been found to be modular. In this work, we extend classical RBNs to define modular RBNs.
Rodrigo Poblanno-Balp, Carlos Gershenson
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Synchronization of Coupled Boolean Networks With Different Update Scheme
IEEE Access, 2020 In this paper, the synchronization of coupled Boolean networks with asynchronous update scheme is investigated. First, the asynchronous Boolean dynamics is transformed into a linear expression with the semi-tensor product technique.
Yujun Niu, Hongjun Liu, Qiang Wei
doaj +1 more source
Quantum annealing algorithms for Boolean tensor networks
Scientific Reports, 2022 Quantum annealers manufactured by D-Wave Systems, Inc., are computational devices capable of finding high-quality heuristic solutions of NP-hard problems.
Elijah Pelofske +4 more
doaj +1 more source
Synchronizing Boolean Networks Asynchronously
SSRN Electronic Journal, 2022 The {\em asynchronous automaton} associated with a Boolean network $f:\{0,1\}^n\to\{0,1\}^n$, considered in many applications, is the finite deterministic automaton where the set of states is $\{0,1\}^n$, the alphabet is $[n]$, and the action of letter $i$ on a state $x$ consists in either switching the $i$th component if $f_i(x)\neq x_i$ or doing ...
Julio Aracena +2 more
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optPBN: an optimisation toolbox for probabilistic Boolean networks.
PLoS ONE, 2014 BackgroundThere exist several computational tools which allow for the optimisation and inference of biological networks using a Boolean formalism. Nevertheless, the results from such tools yield only limited quantitative insights into the complexity of ...
Panuwat Trairatphisan +4 more
doaj +1 more source