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Editorial: Cancer systems biology [PDF]

Frontiers in Genetics, 2022
Jesús Espinal-Enríquez, Claudia Rangel-Escareño, Claudia Rangel-Escareño, Frank Emmert-Streib   +3 more
doaj   +4 more sources

Cancer systems biology: exploring cancer-associated genes on cellular networks [PDF]

Cellular and Molecular Life Sciences (CMLS), 64:1752-1762, 2007, 2007
Genomic alterations lead to cancer complexity and form a major hurdle for a comprehensive understanding of the molecular mechanisms underlying oncogenesis. In this review, we describe the recent advances in studying cancer-associated genes from a systems biological point of view. The integration of known cancer genes onto protein and signaling networks
Edwin Wang, Anne E.G. Lenferink, Maureen D. O'Connor‐McCourt   +2 more
arxiv   +3 more sources

Navigating Multi-Scale Cancer Systems Biology Towards Model-Driven Clinical Oncology and Its Applications in Personalized Therapeutics. [PDF]

Front Oncol, 2021
Gondal MN, Chaudhary SU.
europepmc   +3 more sources

Accelerating cancer systems biology research through Semantic Web technology. [PDF]

Wiley Interdiscip Rev Syst Biol Med, 2013
Wang Z, Sagotsky J, Taylor T, Shironoshita P, Deisboeck TS.   +4 more
europepmc   +3 more sources

Cancer systems biology of TCGA SKCM: efficient detection of genomic drivers in melanoma. [PDF]

Sci Rep, 2015
Guan J, Gupta R, Filipp FV.
europepmc   +3 more sources

An Introduction to the Mathematical Modeling in the Study of Cancer Systems Biology. [PDF]

Cancer Inform, 2018
Alameddine AK, Conlin F, Binnall B.
europepmc   +3 more sources

Comparative assessment of genes driving cancer and somatic evolution in non-cancer tissues: an update of the Network of Cancer Genes (NCG) resource

Genome Biology, 2022
Background Genetic alterations of somatic cells can drive non-malignant clone formation and promote cancer initiation. However, the link between these processes remains unclear and hampers our understanding of tissue homeostasis and cancer development ...
Lisa Dressler, Michele Bortolomeazzi, Mohamed Reda Keddar, Hrvoje Misetic, Giulia Sartini, Amelia Acha-Sagredo, Lucia Montorsi, Neshika Wijewardhane, Dimitra Repana, Joel Nulsen, Jacki Goldman, Marc Pollitt, Patrick Davis, Amy Strange, Karen Ambrose, Francesca D. Ciccarelli   +15 more
doaj   +1 more source

Large libraries of single-chain trimer peptide-MHCs enable antigen-specific CD8+ T cell discovery and analysis

Communications Biology, 2023
The discovery and characterization of antigen-specific CD8+ T cell clonotypes typically involves the labor-intensive synthesis and construction of peptide-MHC tetramers.
William Chour, Jongchan Choi, Jingyi Xie, Mary E. Chaffee, Thomas M. Schmitt, Kathryn Finton, Diana C. DeLucia, Alexander M. Xu, Yapeng Su, Daniel G. Chen, Rongyu Zhang, Dan Yuan, Sunga Hong, Alphonsus H. C. Ng, Jonah Z. Butler, Rick A. Edmark, Lesley C. Jones, Kim M. Murray, Songming Peng, Guideng Li, Roland K. Strong, John K. Lee, Jason D. Goldman, Philip D. Greenberg, James R. Heath   +24 more
doaj   +1 more source

The Network of Cancer Genes (NCG): a comprehensive catalogue of known and candidate cancer genes from cancer sequencing screens

Genome Biology, 2019
The Network of Cancer Genes (NCG) is a manually curated repository of 2372 genes whose somatic modifications have known or predicted cancer driver roles.
Dimitra Repana, Joel Nulsen, Lisa Dressler, Michele Bortolomeazzi, Santhilata Kuppili Venkata, Aikaterini Tourna, Anna Yakovleva, Tommaso Palmieri, Francesca D. Ciccarelli   +8 more
doaj   +1 more source

A persistent invasive phenotype in post-hypoxic tumor cells is revealed by fate mapping and computational modeling

iScience, 2021
Summary: Hypoxia is a critical factor in solid tumors that has been associated with cancer progression and aggressiveness. We recently developed a hypoxia fate mapping system to trace post-hypoxic cells within a tumor for the first time.
Heber L. Rocha, Inês Godet, Furkan Kurtoglu, John Metzcar, Kali Konstantinopoulos, Soumitra Bhoyar, Daniele M. Gilkes, Paul Macklin   +7 more
doaj