Results 51 to 60 of about 10,832 (224)

Genome sequence and Carbohydrate Active Enzymes (CAZymes) repertoire of the thermophilic Caldicoprobacter algeriensis TH7C1T

Microbial Cell Factories, 2022
Background Omics approaches are widely applied in the field of biology for the discovery of potential CAZymes including whole genome sequencing. The aim of this study was to identify protein encoding genes including CAZymes in order to understand glycans-
Rihab Ameri, José Luis García, Amel Bouanane Derenfed, Nathalie Pradel, Sawssan Neifar, Sonia Mhiri, Monia Mezghanni, Nadia Zaraî Jaouadi, Jorge Barriuso, Samir Bejar   +9 more
doaj   +1 more source

Genome-wide identification reveals conserved carbohydrate-active enzyme repertoire in termites

Frontiers in Forests and Global Change, 2023
Termites play an important role as decomposers of organic matter in forests by utilizing their gut symbionts and associated carbohydrate-active enzymes (CAZymes) to digest wood materials. However, there is a limited understanding of the entire repertoire
Shulin He, Amrita Chakraborty, Fei Li, Cao Zhou, Binchuan Zhang, Bin Chen, Bin Jiang   +6 more
doaj   +1 more source

Linking Plant Metabolomics with Fungal Functional Dynamics Reveals a Noncanonical S‐R‐C Adaptive Trajectory

Advanced Science, Volume 13, Issue 31, 4 June 2026.
Using field‐based holo‐omics, we demonstrate that developmental shifts in sorghum leaf metabolomes drive a noncanonical fungal succession from stress tolerators (S) through ruderals (R) to competitors (C). Antifungal metabolites in young leaves select for S strategists with expanded genomes, transient maltose pulses during flowering favor fast‐growing ...
Peilin Chen, John W. Taylor, Cheng Gao
wiley   +1 more source

Targeted metatranscriptomics of compost derived consortia reveals a GH11 exerting an unusual exo-1,4-β-xylanase activity [PDF]

, 2017
Background: Using globally abundant crop residues as a carbon source for energy generation and renewable chemicals production stands out as a promising solution to reduce current dependency on fossil fuels.
A Bacic, A Knob, A Roberts, A Tartar, AJ McCoy, AM Alessi, AM Bolger, Anna M. Alessi, AT Martínez, B Focher, B Langmead, BB Hallac, BD Amel, BG Guimarães, BL Mello, Bruno L. Mello, BV McCleary, C Aslanidis, C Wang, CA Rezende, CM Camilo, CW Simmons, DH Huson, Diego M. Riaño-Pachón, DJ Jiménez, DW Templeton, E Kopylova, E Pruesse, EB Hollister, Eduardo R. deAzevedo, EG Danchin, F Sievers, F Warnecke, Francisco E. G. Guimarães, G Paës, GL Miller, Igor Polikarpov, IP Sarethy, J Jänis, JG Caporaso, JK Colbourne, JM Brulc, JW Bennet, K Wickholm, K Yu, L Chang, L Zhu, LF Martins, M Allgaier, M Hess, M Kanehisa, M Kanehisa, M Kataoka, M Kern, M Qi, M Vardakou, M Watanabe, MA Lima, MB Foston, Melissa C. Espirito Santo, MG Grabherr, N Fierer, Neil C. Bruce, OD Bernardinelli, P Emsley, P Engel, P Sannigrahi, PB Pope, PD Adams, PJ Wood, PP Gardner, Q Qing, R Berlemont, R Berlemont, R Evans, R Ghai, R Hage El, R Kumar, R Lamendella, RD Finn, RI Griffiths, RL Johnson, S Anders, S Heiss-Blanquet, Simon McQueen-Mason, SV Valenzuela, T Urich, UK Laemmli, V Juturu, VB Chen, VC Coletta, W Kabsch, W Mhuantong, WM Ismail, WW Wakarchuk, X Dai, Y Jiang, Y Pauchet, Y Yin   +98 more
core   +1 more source

Exploring the Roles of Tuna‐Associated Acinetobacter sp. YFT067: Implications for Host Health and Metabolism

Animal Research and One Health, EarlyView.
This study firstly isolated a tuna‐derived gut probiotic Acinetobacter seifertii YFT067. Dietary administration of YFT067 played significant roles in promoting growth performance, SCFAs production, lipid absorption, and metabolism of the host, indicating YFT067 as a promising probiotic candidate for enhancing tuna aquaculture productivity through ...
Ying Zou, Hai Huang, Qiongyao Fu, Zhiyuan Lu, Zhiqiang Guo   +4 more
wiley   +1 more source

Genome-wide transcriptional profiling of Botrytis cinerea genes targeting plant cell walls during infections of different hosts

Frontiers in Plant Science, 2014
Cell walls are barriers that impair colonization of host tissues, but also are important reservoirs of energy-rich sugars. Growing hyphae of necrotrophic fungal pathogens, such as Botrytis cinerea (Botrytis, henceforth), secrete enzymes that disassemble ...
Barbara eBlanco-Ulate, Abraham eMorales-Cruz, Katherine C H Amrine, John Marcus Labavitch, Ann ePowell, Dario eCantu   +5 more
doaj   +1 more source

Comparative Genomics and Transcriptomics Analyses Reveal Divergent Plant Biomass-Degrading Strategies in Fungi

Journal of Fungi, 2023
Plant biomass is one of the most abundant renewable carbon sources, which holds great potential for replacing current fossil-based production of fuels and chemicals.
Jiajia Li, Ad Wiebenga, Anna Lipzen, Vivian Ng, Sravanthi Tejomurthula, Yu Zhang, Igor V. Grigoriev, Mao Peng, Ronald P. de Vries   +8 more
doaj   +1 more source

Uncovering the molecular mechanisms of lignocellulose digestion in shipworms [PDF]

, 2018
Lignocellulose forms the structural framework of woody plant biomass and represents the most abundant carbon source in the biosphere. Turnover of woody biomass is a critical component of the global carbon cycle, and the enzymes involved are of increasing
Bates, Rachel, Besser, Katrin, Bruce, Neil Charles, Cragg, Simon M., Dowle, Adam, Elias, Luisa, Li, Yi, McQueen Mason, Simon John, Pesante, Giovanna, Rathbone, Deborah Ann, Sabbadin, Federico, Shipway, J Reuben, Stark, Meg, Steele-King, Clare G.   +13 more
core   +3 more sources

A Metagenome‐Assembled Genome Catalog From the Global Ruminant Microbiomes

Animal Research and One Health, EarlyView.
The Ruminant Gastrointestinal MAG Catalog (RGMC) is a comprehensive global resource offering 40,812 strain‐level genomes across 53 bacterial and 4 archaeal classes. It greatly surpasses prior efforts in scale and diversity, serving as an essential foundation for research in ruminant nutrition, microbial function, and methane mitigation.
Shizhe Zhang, Qiushuang Li, Bingzi Ouyang, Wenxing Wang, Xiang Zhou, Xiumin Zhang, Rong Wang, Zhiliang Tan, Min Wang   +8 more
wiley   +1 more source

Computational studies deciphered the role of key genes and associated networks regulating the defense mechanism in chickpea under Fusarium oxysporum f. sp. ciceris induced wilt condition

Plant Signaling & Behavior
Cicer arietinum, a nutritionally rich legume and a key Rabi crop, is severely impacted by vascular wilt caused by Fusarium oxysporum f. sp. ciceris, leading to substantial yield loss.
Anjali Chaudhary, Annamalai Arunachalam, P. T. V. Lakshmi   +2 more
doaj   +1 more source