Eukaryotic transcriptomics
BMC Genomics, 2009 Background Complementary-DNA based amplified fragment length polymorphism (cDNA-AFLP) is a commonly used tool for assessing the genetic regulation of traits through the correlation of trait expression with cDNA expression profiles.
Wüst Christian +3 more
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Improved coverage of cDNA-AFLP by sequential digestion of immobilized cDNA [PDF]
BMC Genomics, 2008 Background cDNA-AFLP is a transcriptomics technique which does not require prior sequence information and can therefore be used as a gene discovery tool.
Karlovsky Petr +3 more
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GOGOT: a method for the identification of differentially expressed fragments from cDNA-AFLP data [PDF]
Algorithms for Molecular Biology, 2007 Background One-dimensional (1-D) electrophoretic data obtained using the cDNA-AFLP method have attracted great interest for the identification of differentially expressed transcript-derived fragments (TDFs).
Nakai Yuji +3 more
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Identification of salinity responsive genes in lavender through cDNA-AFLP [PDF]
Biotechnology Reports, 2020 Currently, a global demand exists forlavender as a significant medicinal plant and source of essential oils. Freshwater and arable lands are two major factors that inhibit extensive farming of medicinal plants in Iran.
Mania Banikamali +4 more
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Identification of upregulated genes under cold stress in cold-tolerant chickpea using the cDNA-AFLP approach. [PDF]
PLoS ONE, 2013 Low temperature injury is one of the most significant causes of crop damage worldwide. Cold acclimatization processes improve the freezing tolerance of plants.
Ali Dinari +3 more
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Transcriptional profiling by cDNA-AFLP analysis showed differential transcript abundance in response to water stress in
BMC Genomics, 2012 Background Drought is one of the main environmental factors limiting tree growth and productivity of plantation forests worldwide. Populus hopeiensis Hu et Chow is one of the most important commercial plantation tree species in China.
Song Yuepeng +5 more
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cDNA-AFLP analysis reveals differential gene expression in compatible interaction of wheat challenged with
BMC Genomics, 2009 Background Puccinia striiformis f. sp. tritici is a fungal pathogen causing stripe rust, one of the most important wheat diseases worldwide. The fungus is strictly biotrophic and thus, completely dependent on living host cells for its reproduction, which
Huang Lili +11 more
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Differential transcript profiling through cDNA-AFLP showed complexity of rutin biosynthesis and accumulation in seeds of a nutraceutical food crop (
BMC Genomics, 2012 Background Buckwheat, consisting of two cultivated species Fagopyrum tataricum and F. esculentum, is the richest source of flavonoid rutin. Vegetative tissues of both the Fagopyrum species contain almost similar amount of rutin; however, rutin content in
Gupta Nidhi +2 more
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Real-imaging cDNA-AFLP transcript profiling of pancreatic cancer patients: Egr-1 as a potential key regulator of muscle cachexia [PDF]
BMC Cancer, 2012 Background Cancer cachexia is a progressive wasting syndrome and the most prevalent characteristic of cancer in patients with advanced pancreatic adenocarcinoma.
Skorokhod Alexander +4 more
doaj +2 more sources
Cytoplasmic and genomic effects on non-meiosis-driven genetic changes in Brassica hybrids and allotetraploids from pairwise crosses of three cultivated diploids. [PDF]
PLoS ONE, 2013 Nuclear-cytoplasmic interactions are predicted to be important in shaping the genetic changes in early stage of allopolyploidization. Our previous study shows the specific role of genome and cytoplasm affecting the chromosome pairing in Brassica hybrids ...
Cheng Cui +4 more
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