Results 11 to 20 of about 9,990 (205)
Automated muscle histopathology analysis using CellProfiler [PDF]
Skeletal Muscle, 2018 Background Histological assessment of skeletal muscle sections is important for the research of muscle physiology and diseases. Quantifiable measures of skeletal muscle often include mean fiber diameter, fiber size distribution, and centrally nucleated ...
Yeh Siang Lau +3 more
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CellProfiler 4: improvements in speed, utility and usability [PDF]
BMC Bioinformatics, 2021 Background Imaging data contains a substantial amount of information which can be difficult to evaluate by eye. With the expansion of high throughput microscopy methodologies producing increasingly large datasets, automated and objective analysis of the ...
David R. Stirling +5 more
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CellProfiler plugins – An easy image analysis platform integration for containers and Python tools [PDF]
Journal of Microscopy, 2023 AbstractCellProfiler is a widely used software for creating reproducible, reusable image analysis workflows without needing to code. In addition to the >90 modules that make up the main CellProfiler program, CellProfiler has a plugins system that allows for the creation of new modules which integrate with other Python tools or tools that are ...
Erin Weisbart +9 more
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CellProfiler™: free, versatile software for automated biological image analysis [PDF]
BioTechniques, 2007 Careful visual examination of biological samples is quite powerful, but many visual analysis tasks done in the laboratory are repetitive, tedious, and subjective.
Michael R. Lamprecht +2 more
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CellProfiler: image analysis software for identifying and quantifying cell phenotypes [PDF]
Genome Biology, 2006 AbstractBiologists can now prepare and image thousands of samples per day using automation, enabling chemical screens and functional genomics (for example, using RNA interference). Here we describe the first free, open-source system designed for flexible, high-throughput cell image analysis, CellProfiler.
Carpenter, Anne E. +11 more
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STAR Protocols, 2022 Summary: Quantitative assessment of post-ischemic cardiac remodeling is often hampered by tissue complexity and structural heterogeneity of the scar.
Alexander O. Ward +4 more
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Toxicology Mechanisms and Methods, 2020 Adipogenic differentiation is the process by which preadipocytes become mature adipocytes, cells that store energy and regulate metabolic homeostasis. During differentiation, neutral lipids that accumulate in adipocytes can be detected using stains and used as an index of cell differentiation.
Victoria Adomshick +2 more
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ImageJ and CellProfiler: Complements in Open‐Source Bioimage Analysis
Current Protocols, 2021 AbstractImageJ and CellProfiler have long been leading open‐source platforms in the field of bioimage analysis. ImageJ's traditional strength is in single‐image processing and investigation, while CellProfiler is designed for building large‐scale, modular analysis pipelines. Although many image analysis problems can be well solved with one or the other,
Dobson ETA +5 more
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PLoS ONE, 2023 One of the most used and versatile methods to study number, dimensions, content and localization of secretory organelles is confocal microscopy analysis.
Sebastiaan N J Laan +5 more
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CellProfiler Analyst: data exploration and analysis software for complex image-based screens [PDF]
BMC Bioinformatics, 2008 Background Image-based screens can produce hundreds of measured features for each of hundreds of millions of individual cells in a single experiment. Results Here, we describe CellProfiler Analyst, open-source software for the interactive exploration and
Papallo Adam +7 more
doaj +6 more sources