Results 21 to 30 of about 9,990 (205)

Additional file 4: of Automated muscle histopathology analysis using CellProfiler

, 2018
Flow chart illustrating the sequence of image processing with CellProfiler. (PPTX 41 kb)
Siang Lau, Yeh, Xu, Li, Gao, Yandi, Han, Renzhi   +3 more
openaire   +2 more sources

Automated Computer-Assisted Image Analysis for the Fast Quantification of Kidney Fibrosis

Biology, 2022
Chronic kidney disease (CKD) is a common and worldwide health problem and one of the most important causes of morbidity and mortality. Most primary research on this disease requires evaluating the fibrosis index in animal model kidneys, specifically ...
Esteban Andrés Sánchez-Jaramillo, Luz Elena Gasca-Lozano, José María Vera-Cruz, Luis Daniel Hernández-Ortega, Adriana María Salazar-Montes   +4 more
doaj   +1 more source

Identification of Type 4B Secretion System Substrates That Are Conserved among Coxiella burnetii Genomes and Promote Intracellular Growth

Microbiology Spectrum, 2023
Coxiella burnetii is a Gram-negative pathogen that infects a variety of mammalian hosts. Infection of domesticated ewes can cause fetal abortion, whereas acute human infection normally manifests as the flu-like illness Q fever.
Charles L. Larson, Willis Pullman, Paul A. Beare, Robert A. Heinzen   +3 more
doaj   +1 more source

Droplet image analysis with user-friendly freeware CellProfiler [PDF]

Analytical Methods, 2020
We show how to use free open-source CellProfiler for droplet microfluidic image analysis.
Simona Bartkova, Marko Vendelin, Immanuel Sanka, Pille Pata, Ott Scheler   +4 more
openaire   +2 more sources

A User-Friendly Approach for Routine Histopathological and Morphometric Analysis of Skeletal Muscle Using CellProfiler Software

Diagnostics, 2022
Adult skeletal muscle is capable of active and efficient differentiation in the event of injury in both physiological and pathological conditions, such as in Duchenne muscular dystrophy (DMD).
Valerio Laghi, Valentina Ricci, Francesca De Santa, Alessio Torcinaro   +3 more
doaj   +1 more source

Extracted features from CellProfiler.

, 2021
Extracted features from CellProfiler.
Ebba Bergman (11570516), Erik Hallström (11570519), Philip John Harrison (11570522), Håkan Wieslander (10063275), Ankit Gupta (211785)   +4 more
core   +1 more source

CellProfiler Pipeline

, 2022
This is a CellProfiler pipeline for use together with example data in this ...
Wittrup Lab (12183383)
core   +1 more source

Semi-Automated Cell and Tissue Analyses Reveal Regionally Specific Morphological Alterations of Immune and Neural Cells in a Porcine Middle Cerebral Artery Occlusion Model of Stroke

Frontiers in Cellular Neuroscience, 2021
Histopathological analysis of cellular changes in the stroked brain provides critical information pertaining to inflammation, cell death, glial scarring, and other dynamic injury and recovery responses.
Samantha E. Spellicy, Samantha E. Spellicy, Samantha E. Spellicy, Samantha E. Spellicy, Kelly M. Scheulin, Kelly M. Scheulin, Kelly M. Scheulin, Emily W. Baker, Brian J. Jurgielewicz, Brian J. Jurgielewicz, Brian J. Jurgielewicz, Holly A. Kinder, Holly A. Kinder, Elizabeth S. Waters, Elizabeth S. Waters, Elizabeth S. Waters, Janet A. Grimes, Steven L. Stice, Steven L. Stice, Steven L. Stice, Steven L. Stice, Franklin D. West, Franklin D. West, Franklin D. West   +23 more
doaj   +1 more source

Using CellProfiler for Automatic Identification and Measurement of Biological Objects in Images [PDF]

Current Protocols in Molecular Biology, 2015
AbstractVisual analysis is required to perform many biological experiments, from counting colonies to measuring the size or fluorescence intensity of individual cells or organisms. This unit outlines the use of CellProfiler, a free, open‐source image analysis tool that extracts quantitative information from biological images. It includes a step‐by‐step
Mark-Anthony, Bray, Martha S, Vokes, Anne E, Carpenter   +2 more
openaire   +2 more sources

Suggested naming conventions for CellProfiler metadata.

, 2021
Suggested naming conventions for CellProfiler metadata.
Timothy A. Crombie (4377244), Samuel J. Widmayer (10899351), Erik C. Andersen (6807304), Joy Nyaanga (11268729)   +3 more
core   +1 more source