Results 51 to 60 of about 5,264 (155)

EFSA cgMLST gene lists for Escherichia coli and Salmonella enterica chewieNS schema

, 2022
Annex A contains the list of cgMLST loci of Escherichia coli and Salmonella enterica used in the cgMLST analysis in the EFSA One Health WGS System.EU; txt; biohaw@efsa.europa ...
Rossi, Mirko
core   +1 more source

Genomic Insights Into a Hospital‐Acquired High‐Risk Vancomycin‐Resistant Enterococcus faecium Outbreak in Guangdong, China

MicrobiologyOpen, Volume 15, Issue 2, April 2026.
We characterized a dominant ST80 clone responsible for a vancomycin‐resistant Enterococcus faecium outbreak in Chinese hospitals, revealing its close genetic ties to global lineages. A novel PCR method was developed for targeted surveillance of this high‐risk strain. ABSTRACT A comprehensive molecular epidemiological study was conducted on a vancomycin‐
Yang Guo, Chuyue Zhuo, Tianxin Zhang, Kuihai Wu, Zhengqi Shi, Yan Zhu, Jiayuan Huang, Chao Zhuo, Nan Qi   +8 more
wiley   +1 more source

cgMLST and accessory ref-seq

, 2018
locus and alleles for E. coli, S. haemolyticus, E. faecalis and O.
Ingo Autenrieth (4669153), Erwin C. Raangs (4669150), Leonard Schuele (4586566), John W. Rossen (519315), Alex W. Friedrich (794382), Natacha Couto (4220260), Miguel Machado (4234990), Monika Chlebowicz (4669165), Mário Ramirez (49164), Silke Peter (3926003), Catarina Inês Mendes (4669156), Tiago F. Machado (4669159), Sigrid Rosema (4669162), João A. Carriço (220850)   +13 more
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Rapid Typing of Extended‐Spectrum β‐Lactamase (ESBL)‐ and Metallo‐β‐Lactamase (MBL)‐Producing Enterobacterales Using Fourier Transform Infrared (FT‐IR) Spectroscopy

MicrobiologyOpen, Volume 15, Issue 1, February 2026.
Clinical isolates of Klebsiella pneumoniae and Enterobacter cloacae complex were analyzed using FT‐IR spectroscopy and genotyping methods. High concordance was observed, demonstrating the potential of FT‐IR spectroscopy as a rapid screening tool.
Yasuhide Kawamoto, Kosuke Kosai, Mika Murata, Kenji Ota, Fujiko Mitsumoto‐Kaseida, Norihito Kaku, Hiroo Hasegawa, Koichi Izumikawa, Hiroshi Mukae, Katsunori Yanagihara   +9 more
wiley   +1 more source

Evaluation of whole and core genome multilocus sequence typing allele schemes for Salmonella enterica outbreak detection in a national surveillance network, PulseNet USA

Frontiers in Microbiology, 2023
Salmonella enterica is a leading cause of bacterial foodborne and zoonotic illnesses in the United States. For this study, we applied four different whole genome sequencing (WGS)-based subtyping methods: high quality single-nucleotide polymorphism (hqSNP)
Molly M. Leeper, Beth M. Tolar, Taylor Griswold, Eshaw Vidyaprakash, Kelley B. Hise, Grant M. Williams, Sung B. Im, Jessica C. Chen, Hannes Pouseele, Heather A. Carleton   +9 more
doaj   +1 more source

Table_1_Application of a core genome sequence typing (cgMLST) pipeline for surveillance of Clostridioides difficile in China.docx

, 2023
IntroductionClostridioides difficile (C. difficile) is a nosocomial bacterial pathogen that causes antibiotic-associated diarrhea mediated by cellular exotoxins secreted into the intestine during bacterial growth.
Lu Xie (55571), Zhi Gang Cui (14781736), Yuan Yuan Wang (9948056), Wen Zhu Zhang (14781727), Jin Xing Lu (14781739), Yuan Wu (299363), Wen Ge Li (3611936), Lu Lu Bia (14781733), Xiao li Du (14781730)   +8 more
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Table_2_Application of a core genome sequence typing (cgMLST) pipeline for surveillance of Clostridioides difficile in China.xls

, 2023
IntroductionClostridioides difficile (C. difficile) is a nosocomial bacterial pathogen that causes antibiotic-associated diarrhea mediated by cellular exotoxins secreted into the intestine during bacterial growth.
Lu Xie (55571), Zhi Gang Cui (14781736), Yuan Yuan Wang (9948056), Wen Zhu Zhang (14781727), Jin Xing Lu (14781739), Yuan Wu (299363), Wen Ge Li (3611936), Lu Lu Bia (14781733), Xiao li Du (14781730)   +8 more
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Details regarding the 40 strains of E. coli used for cgMLST analysis.

, 2021
Details regarding the 40 strains of E. coli used for cgMLST analysis.
Tomoki Tsuchiya (1667233), Bon Kimura (345712), Hajime Takahashi (345707), Takashi Kuda (576279), Maki Arai (11873643), Yoshiomi Shimabara (11873649), Ayaka Nakamura (8947055), Shohei Wada (11873646), Yuki Fujimoto (10220498)   +8 more
core   +1 more source

Table_4_Application of a core genome sequence typing (cgMLST) pipeline for surveillance of Clostridioides difficile in China.docx

, 2023
IntroductionClostridioides difficile (C. difficile) is a nosocomial bacterial pathogen that causes antibiotic-associated diarrhea mediated by cellular exotoxins secreted into the intestine during bacterial growth.
Lu Xie (55571), Zhi Gang Cui (14781736), Yuan Yuan Wang (9948056), Wen Zhu Zhang (14781727), Jin Xing Lu (14781739), Yuan Wu (299363), Wen Ge Li (3611936), Lu Lu Bia (14781733), Xiao li Du (14781730)   +8 more
core   +1 more source

Brucellosis in Southeast Asia: A Systematic Review of Epidemiological Evidence, Surveillance Gaps, and cgMLST‐Based Insights Into Genetic Relatedness

Transboundary and Emerging Diseases, Volume 2026, Issue 1, 2026.
Brucellosis is an important zoonosis affecting public health and livestock production in Southeast Asia, but its regional epidemiology remains incompletely characterized. In this study, PubMed, Embase, Web of Science, and Scopus were searched for primary studies from the 11 Southeast Asian countries that reported serological findings, molecular ...
Qiuju Yang, Xiaoan Cao, Linghui Yuan, Na Zhang, Zhenjun Li, Zhiguo Liu, Anusak Kerdsin   +6 more
wiley   +1 more source