Results 61 to 70 of about 5,264 (155)

Cumulative cgMLST provides increased discrimination of nested phylogenetic groups

Background Core genome multilocus sequence typing (cgMLST) is a powerful method for bacterial strain genotyping.
Melissa J. Martin, Jose F. Delgado-Blas, Armen Ovsepian, Martin Rethoret-Pasty, François Lebreton, Sylvain Brisse   +5 more
core   +1 more source

Extended‐Spectrum Beta‐Lactamase (ESBL)‐Producing E. coli in Livestock and Free‐Roaming Wildlife: A Combined Phenotyping—Whole‐Genome Sequencing One Health Approach

Transboundary and Emerging Diseases, Volume 2026, Issue 1, 2026.
Antimicrobial resistance (AMR) in Enterobacterales, particularly extended‐spectrum beta‐lactamase‐producing Escherichia coli (ESBL‐Ec), poses a significant public health concern. Widespread antimicrobial use exerts selection pressure, driving the persistence and spread of resistant bacteria in diverse environments.
Sheena Conforti, Adamandia Kapopoulou, Claudia Bank, Belinda Köchle, Bahtiyar Yilmaz, Jens Becker, Zongfu Wu   +6 more
wiley   +1 more source

Whole-genome sequencing-based typing methods for Clostridium butyricum strains from clinical, animal, plant, and environmental sources

Microbiology Spectrum
Clostridium butyricum exhibits a dual role, acting not only as a probiotic but also as an opportunistic pathogen associated with neonatal necrotizing enterocolitis (NEC) and infant botulism.
Nadim Cassir, Victoria Mesa, Laurent Ferraris, Johanne Delannoy, Yousra Mikrat, Anthony Adjamian, Laure Diancourt, Christelle Mazuet, Frédéric Barbut, Bernard La Scola, Julio Aires   +10 more
doaj   +1 more source

Image_1_Application of a core genome sequence typing (cgMLST) pipeline for surveillance of Clostridioides difficile in China.tif

, 2023
IntroductionClostridioides difficile (C. difficile) is a nosocomial bacterial pathogen that causes antibiotic-associated diarrhea mediated by cellular exotoxins secreted into the intestine during bacterial growth.
Lu Xie (55571), Zhi Gang Cui (14781736), Yuan Yuan Wang (9948056), Wen Zhu Zhang (14781727), Jin Xing Lu (14781739), Yuan Wu (299363), Wen Ge Li (3611936), Lu Lu Bia (14781733), Xiao li Du (14781730)   +8 more
core   +1 more source

Multi‐country outbreak of Salmonella Bovismorbificans ST377 infections linked to the consumption of alfalfa sprouted seeds 25 June 2026

EFSA Journal, Volume 24, Issue 7, July 2026.
Abstract Between January and May 2026, 109 confirmed cases of Salmonella Bovismorbificans ST377 were reported from 10 European Union/European Economic Area (EU/EEA) countries (Austria, Belgium, Czechia, Denmark, Finland, Germany, Ireland, Luxembourg, Spain and the Netherlands) and the United Kingdom.
wiley   +1 more source

Review of the Latest Research Progress on Antimicrobial Resistance Gene‐Directed Environmental Disinfection: Nanopore Sequencing

iLABMED, Volume 3, Issue 4, Page 417-426, December 2025.
Third‐generation nanopore sequencing has significant application potential in genomics, clinical diagnosis, and other fields owing to its unique advantages of long read length, real‐time sequencing, and portability. This paper aims to systematically review the latest advances in nanopore sequencing, analyze practical cases in monitoring antimicrobial ...
Jiaying Li
wiley   +1 more source

Multi‐country outbreak of Salmonella Stanley ST2045 infections linked to consumption of flavoured noodle products. 1 July 2026

EFSA Journal, Volume 24, Issue 7, July 2026.
Abstract An outbreak of Salmonella Stanley ST2045 is ongoing in the European Union/European Economic Area (EU/EEA), with a total of 106 confirmed cases having been reported by 13 EU/EEA countries (77) and the United Kingdom (29) between November 2025 and June 2026. The outbreak is mainly affecting children and young adults, and has involved at least 49
wiley   +1 more source

Assessing the Genomic Landscape of Salmonella enterica Isolated From Cattle Faeces on a Nigerian Farm

MicrobiologyOpen, Volume 14, Issue 6, December 2025.
This study examined Salmonella enterica isolated from cattle faeces on a Nigerian farm. All isolates exhibited complete susceptibility to tested antibiotics, and whole‐genome sequencing revealed minimal antimicrobial resistance gene carriage. These findings demonstrate a notably low resistance burden which is an uncommon observation in many low‐and ...
Adewale A. Adetoye, Ayorinde O. Afolayan, Olabisi C. Akinlabi, Stella E. Ekpo, Isaac O. Olatoye, Funmilola A. Ayeni   +5 more
wiley   +1 more source

Table_3_Application of a core genome sequence typing (cgMLST) pipeline for surveillance of Clostridioides difficile in China.xls

, 2023
IntroductionClostridioides difficile (C. difficile) is a nosocomial bacterial pathogen that causes antibiotic-associated diarrhea mediated by cellular exotoxins secreted into the intestine during bacterial growth.
Lu Xie (55571), Zhi Gang Cui (14781736), Yuan Yuan Wang (9948056), Wen Zhu Zhang (14781727), Jin Xing Lu (14781739), Yuan Wu (299363), Wen Ge Li (3611936), Lu Lu Bia (14781733), Xiao li Du (14781730)   +8 more
core   +1 more source

Influence of second and third generation sequencers on cgMLST analysis of closely-related bacterial strains.

, 2021
This bachelor thesis is about influence of sequncers of second and third generationon cgMLST analysis of bacterial genome. In the theoretical section were described selected sequencers of second and third generation and genome assembly principles. In the
Slavíček, David
core   +1 more source