Results 81 to 90 of about 666,094 (196)
A Language for Modeling and Optimizing Experimental Biological Protocols
Computation, 2021 Automation is becoming ubiquitous in all laboratory activities, moving towards precisely defined and codified laboratory protocols. However, the integration between laboratory protocols and mathematical models is still lacking.
Luca Cardelli +2 more
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Noise-robust training of artificial neural networks using chemical reaction networks
APL Machine LearningArtificial neural networks (NNs) can be implemented using chemical reaction networks (CRNs), where the concentrations of species act as inputs and outputs.
Sunghwa Kang, Jinsu Kim
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The Design of 2DOF IMC-PID Controller in Biochemical Reaction Networks
Applied Sciences, 2023 DNA molecules can be adopted to design biomolecular control circuits that can effectively control biochemical reaction processes. However, the leak reaction in actual biochemical reactions causes a significant uncertainty for reactions.
Yang Li, Hui Lv, Xing’an Wang
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Large deviations theory for Markov jump models of chemical reaction networks [PDF]
The Annals of Applied Probability, 2017 We prove a sample path Large Deviation Principle (LDP) for a class of jump processes whose rates are not uniformly Lipschitz continuous in phase space. Building on it we further establish the corresponding Wentzell-Freidlin (W-F) (infinite time horizon ...
A. Agazzi, A. Dembo, J. Eckmann
semanticscholar +1 more source
Peer Community JournalReaction networks have become a major modelling framework in the biological sciences from epidemiology and population biology to genetics and cellular biology.
Hoessly, Linard +2 more
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Error-Controlled Exploration of Chemical Reaction Networks with Gaussian Processes. [PDF]
Journal of Chemical Theory and Computation, 2018 For a theoretical understanding of the reactivity of complex chemical systems, relative energies of stationary points on potential energy hypersurfaces need to be calculated to high accuracy.
G. Simm, M. Reiher
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Computing with chemical reaction networks: a tutorial [PDF]
Natural Computing, 2018 Chemical reaction networks (CRNs) model the behavior of chemical reactions in well-mixed solutions and they can be designed to perform computations. In this tutorial we give an overview of various computational models for CRNs.
R. Brijder
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Roles of network topology in the relaxation dynamics of simple chemical reaction network models
Scientific ReportsUnderstanding the relationship between the structure of chemical reaction networks and their reaction dynamics is essential for unveiling the design principles of living organisms.
Yusuke Himeoka +3 more
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Spontaneous fine-tuning to environment in many-species chemical reaction networks. [PDF]
Proc Natl Acad Sci U S A, 2017 Horowitz JM, England JL.
europepmc +2 more sources
On Constrained Langevin Equations and (Bio)Chemical Reaction Networks
Multiscale Modeling & simulation, 2019 Stochastic effects play an important role in modeling the time evolution of chemical reaction systems in fields such as systems biology, where the concentrations of some constituent molecules can b...
David F. Anderson +3 more
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