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Codon usage bias in metagenomes
2008Codon usage (CU) bias is an effect predominant in prokaryotes whereby synonymous codons are used with different frequencies between different species and even between genes within a single genome. This effect is related to tRNA abundance and can be used to predict expressivity of proteins by comparing their CU with that of a reference set of ...
Vlahoviček, Kristian, Lucić, Vedran
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Nucleotide composition and codon usage bias of SRY gene
Andrologia, 2017The SRY gene is present within the sex-determining region of the Y chromosome which is responsible for maleness in mammals. The nonuniform usage of synonymous codons in the mRNA transcript for encoding a particular amino acid is the codon usage bias (CUB). Analysis of codon usage pattern is important to understand the genetic and molecular organisation
M N, Choudhury, A, Uddin, S, Chakraborty
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Selected codon usage bias in members of the class Mollicutes
Gene, 2011Mollicutes are parasitic microorganisms mainly characterized by small cell sizes, reduced genomes and great A and T mutational bias. We analyzed the codon usage patterns of the completely sequenced genomes of bacteria that belong to this class. We found that for many organisms not only mutational bias but also selection has a major effect on codon ...
Andrés, Iriarte +3 more
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Reduced Selection for Codon Usage Bias in Drosophila miranda
Journal of Molecular Evolution, 2007Biased codon usage in many species results from a balance among mutation, weak selection, and genetic drift. Here I show that selection to maintain biased codon usage is reduced in Drosophila miranda relative to its ancestor. Analyses of mutation patterns in noncoding DNA suggest that the extent of this reduction cannot be explained by changes in ...
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Codon usage bias in metagenomes
2009Codon usage (CU) bias is an effect predominant in prokaryotes whereby synonymous codons are used with different frequencies between different species and even between genes within a single genome. This effect is related to tRNA abundance and can be used to predict expressivity of proteins by comparing their CU with that of a reference set of ...
Lucić, Vedran +3 more
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2011
Synonymous codon usage bias has been extensively studied in Bacteria and Eukaryotes and yet there has been little investigation in the third domain of life, the Archaea. In this thesis I therefore examine the coding sequences of nearly 70 species of Archaea to explore patterns of codon bias.
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Synonymous codon usage bias has been extensively studied in Bacteria and Eukaryotes and yet there has been little investigation in the third domain of life, the Archaea. In this thesis I therefore examine the coding sequences of nearly 70 species of Archaea to explore patterns of codon bias.
openaire +2 more sources
Codon usage bias predicts the functional MYB10 gene in Populus
Journal of Plant Physiology, 2021Xinyuan Wu, Na Sun, Yanping Jing
exaly
Codon usage bias and dinucleotide preference in 29 Drosophila species
G3: Genes, Genomes, Genetics, 2021Prajakta P Kokate +2 more
exaly
Analysis of Codon Usage Bias in Xyloglucan Endotransglycosylase (XET) Genes
International Journal of Molecular Sciences, 2023Bo Xiong, Tie Wang, Shengjia Huang
exaly
Analysis of codon usage bias of chloroplast genomes in Gynostemma species
Physiology and Molecular Biology of Plants, 2021Peipei Zhang, Xu Lu, Xu Wenbo
exaly