Results 41 to 50 of about 17,663 (259)
Ribo-seq enlightens codon usage bias [PDF]
DNA Research, 2017 Codon usage is biased between lowly and highly expressed genes in a genome-specific manner. This universal bias has been well assessed in some unicellular species, but remains problematic to assess in more complex species. We propose a new method to compute codon usage bias based on genome wide translational data. A new technique based on sequencing of
Paulet, Damien +2 more
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Evolution of codon usage bias in Drosophila [PDF]
Proceedings of the National Academy of Sciences, 1997 We first review what is known about patterns of codon usage bias inDrosophilaand make the following points: (i)Drosophilagenes are as biased or more biased than those in microorganisms. (ii) The level of bias of genes and even the particular pattern of codon bias can remain phylogenetically invariant for very long periods of evolution.
J R, Powell, E N, Moriyama
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Comprehensive analysis of codon bias in 13 Ganoderma mitochondrial genomes
Frontiers in Microbiology, 2023 IntroductionCodon usage bias is a prevalent phenomenon observed across various species and genes. However, the specific attributes of codon usage in the mitochondrial genome of Ganoderma species remain unknown.MethodsIn this study, we investigated the ...
Peng Wu +8 more
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Frontiers in Microbiology, 2016 Codon usage bias, as a combined interplay from mutation and selection, has been intensively studied in Escherichia coli. However, codon usage analysis in an E. coli pangenome remains unexplored and the relative importance of mutation and selection acting
Shixiang Sun +3 more
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Codon usage bias reveals genomic adaptations to environmental conditions in an acidophilic consortium. [PDF]
PLoS ONE, 2018 The analysis of codon usage bias has been widely used to characterize different communities of microorganisms. In this context, the aim of this work was to study the codon usage bias in a natural consortium of five acidophilic bacteria used for biomining.
Andrew Hart +3 more
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Codon usage bias and the evolution of influenza A viruses. Codon Usage Biases of Influenza Virus [PDF]
BMC Evolutionary Biology, 2010 Abstract Background The influenza A virus is an important infectious cause of morbidity and mortality in humans and was responsible for 3 pandemics in the 20th century. As the replication of the influenza virus is based on its host's machinery, codon usage of its viral genes might be subject to host selection ...
Wong, Emily +4 more
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Codon usage bias and environmental adaptation in microbial organisms [PDF]
Molecular Genetics and Genomics, 2021 Abstract In each genome, synonymous codons are used with different frequencies; this general phenomenon is known as codon usage bias. It has been previously recognised that codon usage bias could affect the cellular fitness and might be associated with the ecology of microbial organisms.
Arella D., Dilucca M., Giansanti A.
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Analysis of Codon Usage Bias of Thioredoxin in Apicomplexan Protozoa
Parasites & Vectors, 2023 Abstract Background Apicomplexan protozoa are a diverse group of obligate intracellular parasites causing many diseases that affect humans and animals such as malaria, toxoplasmosis, and cryptosporidiosis. Apicomplexan protozoa possess unique thioredoxins (Trxs) that have been shown to regulate various cellular processes including metabolic ...
Dawei Wang, Baoling Yang
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Analysis of factors shaping synonymous codon usage in pseudorabies virus
浙江大学学报. 农业与生命科学版, 2007 Synonymous codon usage and the main factors shaping codon usage in pseudorabies virus were reported in order to understand the architecture and evolution of pseudorabies virus.
YIN Hua-ping +3 more
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Developmental Stage and Level of Codon Usage Bias in Drosophila [PDF]
Molecular Biology and Evolution, 2008 Codon usage bias (CUB) is a ubiquitous observation in molecular evolution. As a model, Drosophila has been particularly well-studied and indications show that selection at least partially controls codon usage, probably through selection for translational efficiency.
Vicario S +3 more
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