Results 1 to 10 of about 419,459 (324)

Interaction of the oncoprotein transcription factor MYC with its chromatin cofactor WDR5 is essential for tumor maintenance. [PDF]

open access: yesProceedings of the National Academy of Sciences of the United States of America, 2019
The oncoprotein transcription factor MYC is overexpressed in the majority of cancers. Key to its oncogenic activity is the ability of MYC to regulate gene expression patterns that drive and maintain the malignant state. MYC is also considered a validated
Adams, Clare M.   +9 more
core   +3 more sources

COFACTOR: an accurate comparative algorithm for structure-based protein function annotation [PDF]

open access: goldNucleic Acids Res., 2012
We have developed a new COFACTOR webserver for automated structure-based protein function annotation. Starting from a structural model, given by either experimental determination or computational modeling, COFACTOR first identifies template proteins of ...
Ambrish Roy, Jianyi Yang, Yang Zhang
openalex   +2 more sources

The methanogenic redox cofactor F420 is widely synthesized by aerobic soil bacteria [PDF]

open access: bronzeThe ISME Journal, 2016
Blair Ney   +12 more
openalex   +2 more sources

Rossmann-toolbox: a deep learning-based protocol for the prediction and design of cofactor specificity in Rossmann fold proteins

open access: yesbioRxiv, 2021
The Rossmann fold enzymes are involved in essential biochemical pathways such as nucleotide and amino acid metabolism. Their functioning relies on interaction with cofactors, small nucleoside-based compounds specifically recognized by a conserved βαβ ...
K. Kamiński   +6 more
semanticscholar   +1 more source

Hierarchically Porous Biocatalytic MOF Microreactor as a Versatile Platform towards Enhanced Multienzyme and Cofactor-Dependent Biocatalysis.

open access: yesAngewandte Chemie, 2020
Metal-organic frameworks (MOFs) have recently emerged as excellent hosting matrices for enzyme immobilization, offering superior physical and chemical protection for biocatalytic reactions.
Jieying Liang   +9 more
semanticscholar   +1 more source

The CoFactor database: organic cofactors in enzyme catalysis [PDF]

open access: yesBioinformatics, 2010
Abstract Motivation: Organic enzyme cofactors are involved in many enzyme reactions. Therefore, the analysis of cofactors is crucial to gain a better understanding of enzyme catalysis. To aid this, we have created the CoFactor database. Results: CoFactor provides a web interface to access hand-curated data extracted from ...
Fischer, Julia D.   +2 more
openaire   +2 more sources

Studies on the changes in protein fluorescence and enzymic activity of aspartate aminotransferase on binding of pyridoxal 5'-Phosphate [PDF]

open access: yes, 1974
1. The a and ,B subforms of aspartate aminotransferase were purified from pig heart. 2. The a subform contained 2mol of pyridoxal 5'-phosphate. The apo-(a subform) could be fully reactived by combination with 2mol of cofactor. 3.
Evans, RW, Holbrook, J
core   +2 more sources

Reconstructing the evolutionary history of nitrogenases: Evidence for ancestral molybdenum‐cofactor utilization

open access: yesGeobiology, 2020
The nitrogenase metalloenzyme family, essential for supplying fixed nitrogen to the biosphere, is one of life's key biogeochemical innovations. The three forms of nitrogenase differ in their metal dependence, each binding either a FeMo‐, FeV‐, or FeFe ...
Amanda K. Garcia   +3 more
semanticscholar   +1 more source

The electronic complexity of the ground-state of the FeMo cofactor of nitrogenase as relevant to quantum simulations. [PDF]

open access: yesJournal of Chemical Physics, 2018
We report that a recent active space model of the nitrogenase FeMo cofactor, proposed in the context of simulations on quantum computers, is not representative of the electronic structure of the FeMo cofactor ground-state.
Zhendong Li   +4 more
semanticscholar   +1 more source

COFACTOR: improved protein function prediction by combining structure, sequence and protein–protein interaction information

open access: yesNucleic Acids Res., 2017
The COFACTOR web server is a unified platform for structure-based multiple-level protein function predictions. By structurally threading low-resolution structural models through the BioLiP library, the COFACTOR server infers three categories of protein ...
Chengxin Zhang   +2 more
semanticscholar   +1 more source

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