Results 21 to 30 of about 2,755,876 (359)

Dynamic changes in community structure and degradation performance of a bacterial consortium MMBC-1 during the subculturing revival reveal the potential decomposers of lignocellulose

Bioresources and Bioprocessing, 2022
Bacterial consortium is an important source of lignocellulolytic strains, but it is still a challenge to distinguish the direct decomposers of lignocellulose from other bacteria in such a complex community.
Jingrong Zhu, Jiawen Liu, Weilin Li, Yunrui Ru, Di Sun, Cong Liu, Zongyun Li, Weijie Liu   +7 more
doaj   +1 more source

OrthoFinder: phylogenetic orthology inference for comparative genomics

Genome Biology, 2019
Here, we present a major advance of the OrthoFinder method. This extends OrthoFinder’s high accuracy orthogroup inference to provide phylogenetic inference of orthologs, rooted gene trees, gene duplication events, the rooted species tree, and comparative
David M. Emms, S. Kelly
semanticscholar   +1 more source

PanACoTA: a modular tool for massive microbial comparative genomics

bioRxiv, 2020
The study of the gene repertoires of microbial species, their pangenomes, has become a key topic of study in microbial evolution and genomics. Yet, the increasing number of genomes available complicates the establishment of the basic building blocks of ...
A. Perrin, E. Rocha
semanticscholar   +1 more source

Circos: an information aesthetic for comparative genomics.

Genome Research, 2009
We created a visualization tool called Circos to facilitate the identification and analysis of similarities and differences arising from comparisons of genomes.
M. Krzywinski, J. Schein, I. Birol, J. Connors, R. Gascoyne, D. Horsman, Steven J. M. Jones, M. Marra   +7 more
semanticscholar   +1 more source

Comparative Genomics ofCryptosporidium [PDF]

International Journal of Genomics, 2013
Until recently, the apicomplexan parasites,Cryptosporidium hominisandC. parvum, were considered the same species. However, the two parasites, now considered distinct species, exhibit significant differences in host range, infectivity, and pathogenicity, and their sequenced genomes exhibit only 95–97% identity.
Aurélien J. Mazurie, João M. Alves, Luiz S. Ozaki, Shiguo Zhou, David C. Schwartz, Gregory A. Buck   +5 more
openaire   +5 more sources

Development of Cell-Specific Aptamers: Recent Advances and Insight into the Selection Procedures

Molecules, 2017
Systematic evolution of ligands by exponential enrichment (SELEX) is an established procedure for developing short single-stranded nucleic acid ligands called aptamers against a target of choice.
Kamal Rahimizadeh, Hadi AlShamaileh, Milena Fratini, Madhuri Chakravarthy, Michelle Stephen, Sarah Shigdar, Rakesh N. Veedu   +6 more
doaj   +1 more source

Phytozome: a comparative platform for green plant genomics

Nucleic Acids Res., 2011
The number of sequenced plant genomes and associated genomic resources is growing rapidly with the advent of both an increased focus on plant genomics from funding agencies, and the application of inexpensive next generation sequencing.
D. Goodstein, S. Shu, R. Howson, R. Neupane, Richard D. Hayes, Joni Fazo, T. Mitros, W. Dirks, U. Hellsten, Nicholas H. Putnam, D. Rokhsar   +10 more
semanticscholar   +1 more source

Rational Design of Short Locked Nucleic Acid-Modified 2′-O-Methyl Antisense Oligonucleotides for Efficient Exon-Skipping In Vitro

Molecular Therapy: Nucleic Acids, 2017
Locked nucleic acid is a prominent nucleic acid analog with unprecedented target binding affinity to cDNA and RNA oligonucleotides and shows remarkable stability against nuclease degradation.
Bao T. Le, Abbie M. Adams, Susan Fletcher, Stephen D. Wilton, Rakesh N. Veedu   +4 more
doaj   +1 more source

Complete mitochondrial genome of Mekong fighting fish, Betta smaragdina (Teleostei: Osphronemidae)

Mitochondrial DNA. Part B. Resources, 2021
Mekong fighting fish (Betta smaragdina) are found in Northeast Thailand. A complete mitochondrial genome (mitogenome) of B. smaragdina was assembled and annotated.
Nararat Laopichienpong, Syed Farhan Ahmad, Worapong Singchat, Aorarat Suntronpong, Tavun Pongsanarm, Kornsuang Jangtarwan, Jakaphan Bulan, Tanawat Pansrikaew, Thitipong Panthum, Nattakan Ariyaraphong, Navapong Subpayakom, Sahabhop Dokkaew, Narongrit Muangmai, Prateep Duengkae, Kornsorn Srikulnath   +14 more
doaj   +1 more source

Mitochondrial genome of bronze-winged jacana (Metopidius indicus, Latham 1790)

Mitochondrial DNA. Part B. Resources, 2021
We reported the mitochondrial genome (mitogenome) of bronze-winged jacana (Metopidius indicus, Latham ). The circular mitogenome was 17,208 base pairs (bp) in length, containing 13 protein-coding genes, two rRNAs, 22 tRNAs, and a non-coding control ...
Jitmat Thintip, Syed Farhan Ahmad, Worapong Singchat, Nararat Laopichienpong, Aorarat Suntronpong, Thitipong Panthum, Dung Ho My Nguyen, Nattakan Ariyaraphong, Narongrit Muangmai, Warong Suksawet, Prateep Duengkae, Kornsorn Srikulnath   +11 more
doaj   +1 more source