Results 121 to 130 of about 4,681,443 (397)

Erratum: Notice of Republication: Simulating Cortical Development as a Self Constructing Process: A Novel Multi-Scale Approach Combining Molecular and Physical Aspects.

open access: yesPLoS Computational Biology, 2019
[This corrects the article DOI: 10.1371/journal.pcbi.1003173.].
PLOS Computational Biology Staff
doaj   +1 more source

Correction: The role of the encapsulated cargo in microcompartment assembly. [PDF]

open access: yesPLoS Computational Biology, 2019
[This corrects the article DOI: 10.1371/journal.pcbi.1006351.].
PLOS Computational Biology Staff
doaj   +1 more source

The computational stance in biology [PDF]

open access: yesPhilosophical Transactions of the Royal Society B: Biological Sciences, 2019
The goal of this article is to call attention to, and to express caution about, the extensive use of computation as an explanatory concept in contemporary biology. Inspired by Dennett's ‘intentional stance’ in the philosophy of mind, I suggest that a ‘computational stance’ can be a productive approach to evaluating the value of computational concepts ...
openaire   +3 more sources

Analysis of comprehensive genomic profiling of solid tumors with a novel assay for broad analysis in clinical diagnostics

open access: yesMolecular Oncology, EarlyView.
In molecular cancer diagnostics, comprehensive genomic profiling (CGP) is going to replace the small NGS panels since it provides all clinically relevant somatic variants as well as genomic biomarkers with clinical value. Here, we compared two CGP assays and demonstrate that the choice for diagnostic implementation will depend on the specific ...
Guy Froyen   +17 more
wiley   +1 more source

Development and validation of computational models of cellular interaction [PDF]

open access: yes, 2004
In this paper we take the view that computational models of biological systems should satisfy two conditions – they should be able to predict function at a systems biology level, and robust techniques of validation against biological models must be ...
Holcombe, W.M.L.   +2 more
core   +1 more source

Biological Computing Fundamentals and Futures [PDF]

open access: yesarXiv, 2009
The fields of computing and biology have begun to cross paths in new ways. In this paper a review of the current research in biological computing is presented. Fundamental concepts are introduced and these foundational elements are explored to discuss the possibilities of a new computing paradigm.
arxiv  

Correction: clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets.

open access: yesPLoS Computational Biology, 2019
[This corrects the article DOI: 10.1371/journal.pcbi.1006378.].
PLOS Computational Biology Staff
doaj   +1 more source

Putting benchmarks in their rightful place: The heart of computational biology

open access: yesPLoS Comput. Biol., 2018
Research in computational biology has given rise to a vast number of methods developed to solve scientific problems. For areas in which many approaches exist, researchers have a hard time deciding which tool to select to address a scientific challenge ...
B. Peters   +4 more
semanticscholar   +1 more source

Molecular and functional profiling unravels targetable vulnerabilities in colorectal cancer

open access: yesMolecular Oncology, EarlyView.
We used whole exome and RNA‐sequencing to profile divergent genomic and transcriptomic landscapes of microsatellite stable (MSS) and microsatellite instable (MSI) colorectal cancer. Alterations were classified using a computational score for integrative cancer variant annotation and prioritization.
Efstathios‐Iason Vlachavas   +15 more
wiley   +1 more source

Using Glowscript to Teach Numerical Modeling in Undergraduate Biology Education [PDF]

open access: yesarXiv, 2022
Mathematical and numerical modeling is an increasingly important, yet often neglected, topic for biology students. We have found Glowscript to facilitate teaching and introducing computer simulations to students. In particular, the built-in the graphics and graphing capabilities can provide students with immediate feedback.
arxiv  

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