Results 41 to 50 of about 4,294,998 (178)

Unveiling the Multilocus Sequence Typing (MLST) Schemes and Core Genome Phylogenies for Genotyping Chlamydia trachomatis [PDF]

Frontiers in Microbiology, 2018
Multilocus sequence typing (MLST) has become a useful tool for studying the genetic diversity of important public health pathogens, such as Chlamydia trachomatis (Ct).
Luz H. Patiño, Luz H. Patiño, Milena Camargo, Milena Camargo, Marina Muñoz, Dora I. Ríos-Chaparro, Manuel A. Patarroyo, Manuel A. Patarroyo, Juan D. Ramírez   +8 more
doaj   +2 more sources

Genus-wide Yersinia core-genome multilocus sequence typing for species identification and strain characterization. [PDF]

Microb Genom, 2019
The genus Yersinia comprises species that differ widely in their pathogenic potential and public-health significance. Yersinia pestis is responsible for plague, while Yersinia enterocolitica is a prominent enteropathogen.
Savin C, Criscuolo A, Guglielmini J, Le Guern AS, Carniel E, Pizarro-Cerdá J, Brisse S.   +6 more
europepmc   +2 more sources

Core Genome Multilocus Sequence Typing and Single Nucleotide Polymorphism Analysis in the Epidemiology of Brucella melitensis Infections. [PDF]

J Clin Microbiol, 2018
The use of whole-genome sequencing (WGS) using next-generation sequencing (NGS) technology has become a widely accepted method for microbiology laboratories in the application of molecular typing for outbreak tracing and genomic epidemiology.
Janowicz A, De Massis F, Ancora M, Cammà C, Patavino C, Battisti A, Prior K, Harmsen D, Scholz H, Zilli K, Sacchini L, Di Giannatale E, Garofolo G.   +12 more
europepmc   +2 more sources

Defining and Evaluating a Core Genome Multilocus Sequence Typing Scheme for Genome-Wide Typing of Clostridium difficile. [PDF]

J Clin Microbiol, 2018
Clostridium difficile, recently renamed Clostridioides difficile, is the most common cause of antibiotic-associated nosocomial gastrointestinal infections worldwide.
Bletz S, Janezic S, Harmsen D, Rupnik M, Mellmann A.   +4 more
europepmc   +2 more sources

Establishment and Evaluation of a Core Genome Multilocus Sequence Typing Scheme for Whole-Genome Sequence-Based Typing of Pseudomonas aeruginosa. [PDF]

Journal of Clinical Microbiology, 2021
Alexander Mellmann, Karola Prior, Dag Harmsen   +2 more
exaly   +2 more sources

Genomic characterization of a multidrug-resistant Salmonella Rissen ST469 carrying blaCTX-M-55 gene and Tn6777 isolated from a paediatric patient in China

Journal of Global Antimicrobial Resistance, 2023
: Objectives: Here we report a complete genome sequence of a multidrug-resistant Salmonella Rissen, carrying blaCTX-M-55 and Tn6777, isolated from a Chinese paediatric patient. Methods: Whole genome of S.
Meina Yue, Xinfeng Zhao, Xue Hu, Di Liu, Xiaoyu Li, Yidong Wu   +5 more
doaj   +1 more source

Application of a core genome sequence typing (cgMLST) pipeline for surveillance of Clostridioides difficile in China

Frontiers in Cellular and Infection Microbiology, 2023
IntroductionClostridioides difficile (C. difficile) is a nosocomial bacterial pathogen that causes antibiotic-associated diarrhea mediated by cellular exotoxins secreted into the intestine during bacterial growth.
Yuan Yuan Wang, Lu Xie, Wen Zhu Zhang, Xiao li Du, Wen Ge Li, Lu Lu Bia, Zhi Gang Cui, Yuan Wu, Yuan Wu, Jin Xing Lu, Jin Xing Lu   +10 more
doaj   +1 more source

The core genome multi-locus sequence typing of Mycoplasma anserisalpingitidis

BMC Genomics, 2020
Background Mycoplasma anserisalpingitidis is a waterfowl pathogen that mainly infects geese, can cause significant economic losses and is present worldwide.
Áron B. Kovács, Zsuzsa Kreizinger, Barbara Forró, Dénes Grózner, Alexa Mitter, Szilvia Marton, Krisztina Bali, Anna Sawicka, Grzegorz Tomczyk, Krisztián Bányai, Miklós Gyuranecz   +10 more
doaj   +1 more source

Advances in Traceability Typing and Identification of Foodborne Pathogens

Shipin gongye ke-ji, 2022
Foodborne pathogens are the main factors affecting food quality and safety. Timely and accurate strain typing data enable rapid detection of outbreak clusters, informing ongoing infection control and public health responses, which are important for ...
Yao LIU, Yuanmiao WEI, Ling LI, Lunzhao YI, Weiwei ZHAO, Ying SHANG, Jianxin CAO   +6 more
doaj   +1 more source

Evaluation of core genome and whole genome multilocus sequence typing schemes for Campylobacter jejuni and Campylobacter coli outbreak detection in the USA

Microbial Genomics, 2023
Campylobacter is a leading causing of bacterial foodborne and zoonotic illnesses in the USA. Pulsed-field gene electrophoresis (PFGE) and 7-gene multilocus sequence typing (MLST) have been historically used to differentiate sporadic from outbreak ...
Lavin A. Joseph, T. Griswold, Eshaw Vidyaprakash, Sung B. Im, G. Williams, H. Pouseele, K. Hise, H. Carleton   +7 more
semanticscholar   +1 more source