Results 21 to 30 of about 4,294,998 (178)

chewBBACA 3: lowering the barrier for scalable and detailed whole- and core-genome multilocus sequence typing. [PDF]

Genome Med
The wide adoption of whole genome sequencing has enabled the implementation of genomics-based systems, which provide unparalleled resolution for the surveillance and outbreak investigation of bacterial pathogens.
Mamede R, Vila-Cerqueira P, Carriço JA, Ramirez M.   +3 more
europepmc   +2 more sources

Core genome multilocus sequence typing (cgMLST) applicable to the monophyletic <i>Klebsiella oxytoca</i> species complex. [PDF]

J Clin Microbiol
The environmental bacterium Klebsiella oxytoca displays an alarming increase of antibiotic-resistant strains that frequently cause outbreaks in intensive care units. Due to its prevalence in the environment and opportunistic presence in humans, molecular
Dabernig-Heinz J, Wagner GE, Prior K, Lipp M, Kienesberger S, Ruppitsch W, Rønning TG, Harmsen D, Steinmetz I, Leitner E.   +9 more
europepmc   +2 more sources

A Core Genome Multilocus Sequence Typing Scheme for Pseudomonas aeruginosa [PDF]

Frontiers in Microbiology, 2020
Pseudomonas aeruginosa is a ubiquitous microorganism and an important opportunistic pathogen responsible for a broad spectrum of infections mainly in immunosuppressed and critically ill patients.
Romário Oliveira de Sales, Letícia Busato Migliorini, Renato Puga, Bela Kocsis, Patricia Severino   +4 more
doaj   +2 more sources

Investigating environmental transmission to resolve a Bacillus cereus group outbreak in a neonatal intensive care unit using core genome multilocus sequence typing. [PDF]

Antimicrob Resist Infect Control
We analyzed an outbreak of Bacillus cereus group (Bcg) at a single-center neonatal intensive care unit level IV by conducting comprehensive sampling of both patients and the environment.
Tönnies H, Heep A, Herrmann J, Lange M, Mellmann A, Hamprecht A.   +5 more
europepmc   +2 more sources

Antimicrobial Resistance Profile, Whole-Genome Sequencing and Core Genome Multilocus Sequence Typing of B. anthracis Isolates in Croatia from 2001 to 2022. [PDF]

Antibiotics (Basel)
Bacillus anthracis, the causative agent of anthrax disease, is a worldwide threat to livestock, wildlife and public health. It is also considered one of the most important pathogens of bioterrorism.
Kompes G, Duvnjak S, Reil I, Mihaljević Ž, Habrun B, Benić M, Cvetnić L, Špičić S, Bagarić A.   +8 more
europepmc   +2 more sources

Development and implementation of a core genome multilocus sequence typing scheme for <i>Haemophilus influenzae</i>. [PDF]

Microb Genom
Haemophilus influenzae is part of the human nasopharyngeal microbiota and a pathogen causing invasive disease. The extensive genetic diversity observed in H.
Krisna MA, Jolley KA, Monteith W, Boubour A, Hamers RL, Brueggemann AB, Harrison OB, Maiden MCJ.   +7 more
europepmc   +2 more sources

A standardized core genome multilocus sequence typing and life identification number barcoding framework for global <i>Pasteurella multocida</i> surveillance and outbreak investigation. [PDF]

Microb Genom
Effective pathogen surveillance requires robust typing systems for outbreak detection and understanding transmission dynamics, evolutionary patterns, host colonization and disease progression. Pasteurella multocida is a globally distributed pathogen that
Lopez Garcia AV, Jolley KA, Parfitt KM, Hashish A, Sato Y, El-Gazzar M, Nunez-Garcia J, Fearnley C, Sheppard SK, Maiden MCJ, Anjum MF.   +10 more
europepmc   +2 more sources

Development and implementation of a core genome multilocus sequence typing scheme for <i>Yersinia enterocolitica:</i> a tool for surveillance and outbreak detection. [PDF]

J Clin Microbiol
Yersinia enterocolitica (Y. enterocolitica) is the most frequent etiological agent of yersiniosis and has been responsible for several national outbreaks in Norway and elsewhere.
Pires J, Brandal LT, Naseer U.
europepmc   +2 more sources

Acinetobacter baumannii Genomic Sequence-Based Core Genome Multilocus Sequence Typing Using Ridom SeqSphere+ and Antimicrobial Susceptibility Prediction in ARESdb. [PDF]

J Clin Microbiol, 2022
Whole-genome sequencing (WGS) is rapidly replacing traditional typing methods for the investigation of infectious disease outbreaks. Additionally, WGS data are being used to predict phenotypic antimicrobial susceptibility.
Fida M, Cunningham SA, Beisken S, Posch AE, Chia N, Jeraldo PR, Murphy MP, Zinsmaster NM, Patel R, Antibacterial Resistance Leadership Group.   +9 more
europepmc   +2 more sources

Whole-Genome Sequencing-Based Profiling of Antimicrobial Resistance Genes and Core-Genome Multilocus Sequence Typing of Campylobacter jejuni from Different Sources in Lithuania. [PDF]

Int J Mol Sci, 2023
Campylobacter jejuni is known as one of the main causative agents of gastroenteritis in humans worldwide, and the rise of antimicrobial resistance (AMR) in Campylobacter is a growing public health challenge of special concern.
Aksomaitiene J, Novoslavskij A, Malakauskas M.   +2 more
europepmc   +2 more sources