Results 11 to 20 of about 4,294,998 (178)

Core-Genome Multilocus Sequence Typing for Epidemiological and Evolutionary Analyses of Phytopathogenic Xanthomonas citri. [PDF]

Appl Environ Microbiol, 2023
Xanthomonas citri is a plant pathogen that causes major economic losses to the citrus industry and sweet orange production in particular. Several subspecies and pathogens are recognized, with host ranges including soybean, common bean, mango, pomegranate,
Ragupathy R, Jolley KA, Zamuner C, Jones JB, Redfern J, Behlau F, Ferreira H, Enright MC.   +7 more
europepmc   +3 more sources

Evaluation of whole and core genome multilocus sequence typing allele schemes for Salmonella enterica outbreak detection in a national surveillance network, PulseNet USA. [PDF]

Front Microbiol, 2023
Salmonella enterica is a leading cause of bacterial foodborne and zoonotic illnesses in the United States. For this study, we applied four different whole genome sequencing (WGS)-based subtyping methods: high quality single-nucleotide polymorphism (hqSNP)
Leeper MM, Tolar BM, Griswold T, Vidyaprakash E, Hise KB, Williams GM, Im SB, Chen JC, Pouseele H, Carleton HA.   +9 more
europepmc   +2 more sources

A core-genome multilocus sequence typing scheme for the detection of genetically related Streptococcus pyogenes clusters. [PDF]

J Clin Microbiol, 2023
The recently observed increase in invasive Streptococcus pyogenes infections causes concern in Europe. However, conventional molecular typing methods lack discriminatory power to aid investigations of outbreaks caused by S. pyogenes.
Toorop MMA, Kraakman MEM, Hoogendijk IV, van Prehn J, Claas ECJ, Wessels E, Boers SA.   +6 more
europepmc   +2 more sources

Core Genome Multilocus Sequence Typing Scheme for Improved Characterization and Epidemiological Surveillance of Pathogenic Brucella. [PDF]

J Clin Microbiol, 2022
Brucellosis poses a significant burden to human and animal health worldwide. Robust and harmonized molecular epidemiological approaches and population studies that include routine disease screening are needed to efficiently track the origin and spread of
Abdel-Glil MY, Thomas P, Brandt C, Melzer F, Subbaiyan A, Chaudhuri P, Harmsen D, Jolley KA, Janowicz A, Garofolo G, Neubauer H, Pletz MW.   +11 more
europepmc   +2 more sources

Development and validation of a core-genome multilocus sequence typing scheme for <i>Legionella longbeachae</i>. [PDF]

Microb Genom
Legionella longbeachae is a pathogen of global health importance due to its role in causing Legionnaires’ disease (LD), a severe form of community-acquired pneumonia.
Miller H, Harte D, Khokryakova I, Jordan R, Bradshaw A, Wang J, Winter D.   +6 more
europepmc   +2 more sources

Development and validation of a core genome multilocus sequence typing scheme for <i>Citrobacter freundii</i>: application in outbreak investigations and comparative analysis across the <i>Citrobacter</i> genus. [PDF]

J Clin Microbiol
Citrobacter freundii is a nosocomial pathogen increasingly associated with multidrug resistance and hospital outbreaks. Despite its growing clinical relevance, no standardized core genome multilocus sequence typing (cgMLST) scheme has been available for ...
Kieninger B, Wagner GE, Rath A, Eichner A, Fritsch J, Caplunik-Pratsch A, Alikhani J, Heydarzadeh-Ghamsary P, Cabal-Rosel A, Ruppitsch W, Harmsen D, Abdulla MR, Ulm L, Becker K, Schneider-Brachert W, Kohler C.   +15 more
europepmc   +2 more sources

Core genome multilocus sequence typing of Clostridioides difficile to investigate transmission in the hospital setting. [PDF]

Eur J Clin Microbiol Infect Dis, 2023
Traditional epidemiological investigations of healthcare-associated Clostridioides difficile infection (HA-CDI) are often insufficient. This study aimed to evaluate a procedure that includes secondary isolation and genomic typing of single toxigenic ...
Filippidis P, Senn L, Poncet F, Grandbastien B, Prod'hom G, Greub G, Guery B, Blanc DS.   +7 more
europepmc   +2 more sources

Core-genome multilocus sequence typing and core-SNP analysis of <i>Clostridium neonatale</i> strains isolated in different spatio-temporal settings. [PDF]

Microbiol Spectr, 2023
Clostridium neonatale was described as a new species within the Clostridium genus cluster I sensu stricto. It was recovered from the gut microbiota of infants and has been associated with necrotizing enterocolitis (NEC), a severe gastrointestinal disease
Mesa V, Delannoy J, Ferraris L, Diancourt L, Mazuet C, Barbut F, Aires J.   +6 more
europepmc   +2 more sources

A Core Genome Multilocus Sequence Typing Scheme for Streptococcus mutans [PDF]

mSphere, 2020
Streptococcus mutans is one of the primary pathogens responsible for the development of dental caries. Recent whole-genome sequencing (WGS)-based core genome multilocus sequence typing (cgMLST) approaches have been employed in epidemiological studies of ...
Shanshan Liu, Xiaoliang Li, Zhenfei Guo, Hongsheng Liu, Yu Sun, Yudong Liu, Qinglong Wang, Shengkai Liao, Kai Zhang   +8 more
doaj   +4 more sources

Development of a core genome multilocus sequence typing scheme and life identification number code classification system for <i>Staphylococcus aureus</i>. [PDF]

Microb Genom
Staphylococcus aureus infects both humans and animals, and antimicrobial resistance, including multidrug resistance, complicates the treatment of S. aureus infections.
Hadjirin NF, Yassine I, Bray JE, Maiden MCJ, Jolley KA, Brueggemann AB.   +5 more
europepmc   +2 more sources